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DNAJB13 (DnaJ heat shock protein family (Hsp40) member B13)

Identity

Alias_namesDnaJ (Hsp40) related, subfamily B, member 13
DnaJ (Hsp40) homolog, subfamily B, member 13
Alias_symbol (synonym)TSARG6
RSPH16A
Other aliasCILD34
TSARG5
HGNC (Hugo) DNAJB13
LocusID (NCBI) 374407
Atlas_Id 62559
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 73950319 and ends at 73970287 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM168A (11q13.4) / DNAJB13 (11q13.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJB13   30718
Cards
Entrez_Gene (NCBI)DNAJB13  374407  DnaJ heat shock protein family (Hsp40) member B13
AliasesCILD34; RSPH16A; TSARG5; TSARG6
GeneCards (Weizmann)DNAJB13
Ensembl hg19 (Hinxton)ENSG00000187726 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187726 [Gene_View]  chr11:73950319-73970287 [Contig_View]  DNAJB13 [Vega]
ICGC DataPortalENSG00000187726
TCGA cBioPortalDNAJB13
AceView (NCBI)DNAJB13
Genatlas (Paris)DNAJB13
WikiGenes374407
SOURCE (Princeton)DNAJB13
Genetics Home Reference (NIH)DNAJB13
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJB13  -     chr11:73950319-73970287 +  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJB13  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblDNAJB13 - 11q13.4 [CytoView hg19]  DNAJB13 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIDNAJB13 [Mapview hg19]  DNAJB13 [Mapview hg38]
OMIM610263   617091   
Gene and transcription
Genbank (Entrez)AF516185 AK058095 AK128589 AY138810 AY325766
RefSeq transcript (Entrez)NM_153614
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJB13
Cluster EST : UnigeneHs.567888 [ NCBI ]
CGAP (NCI)Hs.567888
Alternative Splicing GalleryENSG00000187726
Gene ExpressionDNAJB13 [ NCBI-GEO ]   DNAJB13 [ EBI - ARRAY_EXPRESS ]   DNAJB13 [ SEEK ]   DNAJB13 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJB13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374407
GTEX Portal (Tissue expression)DNAJB13
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59910   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59910  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59910
Splice isoforms : SwissVarP59910
PhosPhoSitePlusP59910
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_C    DnaJ_domain    DnaJ_domain_CS    HSP40/DnaJ_pept-bd   
Domain families : Pfam (Sanger)DnaJ (PF00226)    DnaJ_C (PF01556)   
Domain families : Pfam (NCBI)pfam00226    pfam01556   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJB13
DMDM Disease mutations374407
Blocks (Seattle)DNAJB13
SuperfamilyP59910
Human Protein AtlasENSG00000187726
Peptide AtlasP59910
HPRD15573
IPIIPI00374262   IPI00374263   IPI01012604   
Protein Interaction databases
DIP (DOE-UCLA)P59910
IntAct (EBI)P59910
FunCoupENSG00000187726
BioGRIDDNAJB13
STRING (EMBL)DNAJB13
ZODIACDNAJB13
Ontologies - Pathways
QuickGOP59910
Ontology : AmiGOmolecular_function  protein binding  cellular_component  cytoplasm  axoneme  protein folding  motile cilium  sperm flagellum  unfolded protein binding  axonemal central apparatus assembly  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  cytoplasm  axoneme  protein folding  motile cilium  sperm flagellum  unfolded protein binding  axonemal central apparatus assembly  
NDEx NetworkDNAJB13
Atlas of Cancer Signalling NetworkDNAJB13
Wikipedia pathwaysDNAJB13
Orthology - Evolution
OrthoDB374407
GeneTree (enSembl)ENSG00000187726
Phylogenetic Trees/Animal Genes : TreeFamDNAJB13
HOVERGENP59910
HOGENOMP59910
Homologs : HomoloGeneDNAJB13
Homology/Alignments : Family Browser (UCSC)DNAJB13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJB13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJB13
dbVarDNAJB13
ClinVarDNAJB13
1000_GenomesDNAJB13 
Exome Variant ServerDNAJB13
ExAC (Exome Aggregation Consortium)DNAJB13 (select the gene name)
Genetic variants : HAPMAP374407
Genomic Variants (DGV)DNAJB13 [DGVbeta]
DECIPHERDNAJB13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJB13 
Mutations
ICGC Data PortalDNAJB13 
TCGA Data PortalDNAJB13 
Broad Tumor PortalDNAJB13
OASIS PortalDNAJB13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJB13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJB13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJB13
DgiDB (Drug Gene Interaction Database)DNAJB13
DoCM (Curated mutations)DNAJB13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJB13 (select a term)
intoGenDNAJB13
Cancer3DDNAJB13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610263    617091   
Orphanet665   
MedgenDNAJB13
Genetic Testing Registry DNAJB13
NextProtP59910 [Medical]
TSGene374407
GENETestsDNAJB13
Huge Navigator DNAJB13 [HugePedia]
snp3D : Map Gene to Disease374407
BioCentury BCIQDNAJB13
ClinGenDNAJB13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374407
Chemical/Pharm GKB GenePA142671972
Clinical trialDNAJB13
Miscellaneous
canSAR (ICR)DNAJB13 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJB13
EVEXDNAJB13
GoPubMedDNAJB13
iHOPDNAJB13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:08:44 CEST 2017

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