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DNAJB4 (DnaJ heat shock protein family (Hsp40) member B4)

Identity

Alias_namesDnaJ (Hsp40) homolog
Alias_symbol (synonym)HLJ1
HGNC (Hugo) DNAJB4
LocusID (NCBI) 11080
Atlas_Id 40343
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 78445868 and ends at 78483648 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJB4   14886
Cards
Entrez_Gene (NCBI)DNAJB4  11080  DnaJ heat shock protein family (Hsp40) member B4
AliasesDNAJW; DjB4; HLJ1
GeneCards (Weizmann)DNAJB4
Ensembl hg19 (Hinxton)ENSG00000162616 [Gene_View]  chr1:78445868-78483648 [Contig_View]  DNAJB4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162616 [Gene_View]  chr1:78445868-78483648 [Contig_View]  DNAJB4 [Vega]
ICGC DataPortalENSG00000162616
TCGA cBioPortalDNAJB4
AceView (NCBI)DNAJB4
Genatlas (Paris)DNAJB4
WikiGenes11080
SOURCE (Princeton)DNAJB4
Genetics Home Reference (NIH)DNAJB4
Genomic and cartography
GoldenPath hg19 (UCSC)DNAJB4  -     chr1:78445868-78483648 +  1p31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DNAJB4  -     1p31.1   [Description]    (hg38-Dec_2013)
EnsemblDNAJB4 - 1p31.1 [CytoView hg19]  DNAJB4 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIDNAJB4 [Mapview hg19]  DNAJB4 [Mapview hg38]
OMIM611327   
Gene and transcription
Genbank (Entrez)AB209922 AK297985 AK313205 BC034721 BI831822
RefSeq transcript (Entrez)NM_001317099 NM_001317100 NM_001317101 NM_001317102 NM_001317103 NM_007034
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)DNAJB4
Cluster EST : UnigeneHs.690049 [ NCBI ]
CGAP (NCI)Hs.690049
Alternative Splicing GalleryENSG00000162616
Gene ExpressionDNAJB4 [ NCBI-GEO ]   DNAJB4 [ EBI - ARRAY_EXPRESS ]   DNAJB4 [ SEEK ]   DNAJB4 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJB4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11080
GTEX Portal (Tissue expression)DNAJB4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UDY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UDY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UDY4
Splice isoforms : SwissVarQ9UDY4
PhosPhoSitePlusQ9UDY4
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_C    DnaJ_domain    DnaJ_domain_CS    HSP40/DnaJ_pept-bd   
Domain families : Pfam (Sanger)DnaJ (PF00226)    DnaJ_C (PF01556)   
Domain families : Pfam (NCBI)pfam00226    pfam01556   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJB4
DMDM Disease mutations11080
Blocks (Seattle)DNAJB4
SuperfamilyQ9UDY4
Human Protein AtlasENSG00000162616
Peptide AtlasQ9UDY4
HPRD07486
IPIIPI00003848   IPI00645574   
Protein Interaction databases
DIP (DOE-UCLA)Q9UDY4
IntAct (EBI)Q9UDY4
FunCoupENSG00000162616
BioGRIDDNAJB4
STRING (EMBL)DNAJB4
ZODIACDNAJB4
Ontologies - Pathways
QuickGOQ9UDY4
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  cytosol  plasma membrane  protein folding  response to unfolded protein  response to heat  unfolded protein binding  chaperone binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  cytosol  plasma membrane  protein folding  response to unfolded protein  response to heat  unfolded protein binding  chaperone binding  extracellular exosome  
NDEx NetworkDNAJB4
Atlas of Cancer Signalling NetworkDNAJB4
Wikipedia pathwaysDNAJB4
Orthology - Evolution
OrthoDB11080
GeneTree (enSembl)ENSG00000162616
Phylogenetic Trees/Animal Genes : TreeFamDNAJB4
HOVERGENQ9UDY4
HOGENOMQ9UDY4
Homologs : HomoloGeneDNAJB4
Homology/Alignments : Family Browser (UCSC)DNAJB4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJB4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJB4
dbVarDNAJB4
ClinVarDNAJB4
1000_GenomesDNAJB4 
Exome Variant ServerDNAJB4
ExAC (Exome Aggregation Consortium)DNAJB4 (select the gene name)
Genetic variants : HAPMAP11080
Genomic Variants (DGV)DNAJB4 [DGVbeta]
DECIPHER (Syndromes)1:78445868-78483648  ENSG00000162616
CONAN: Copy Number AnalysisDNAJB4 
Mutations
ICGC Data PortalDNAJB4 
TCGA Data PortalDNAJB4 
Broad Tumor PortalDNAJB4
OASIS PortalDNAJB4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJB4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJB4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJB4
DgiDB (Drug Gene Interaction Database)DNAJB4
DoCM (Curated mutations)DNAJB4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJB4 (select a term)
intoGenDNAJB4
Cancer3DDNAJB4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611327   
Orphanet
MedgenDNAJB4
Genetic Testing Registry DNAJB4
NextProtQ9UDY4 [Medical]
TSGene11080
GENETestsDNAJB4
Huge Navigator DNAJB4 [HugePedia]
snp3D : Map Gene to Disease11080
BioCentury BCIQDNAJB4
ClinGenDNAJB4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11080
Chemical/Pharm GKB GenePA27416
Clinical trialDNAJB4
Miscellaneous
canSAR (ICR)DNAJB4 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJB4
EVEXDNAJB4
GoPubMedDNAJB4
iHOPDNAJB4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:35:54 CET 2016

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