Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DNAJB5 (DnaJ heat shock protein family (Hsp40) member B5)

Identity

Alias_namesDnaJ (Hsp40) homolog
Alias_symbol (synonym)Hsc40
Other alias
HGNC (Hugo) DNAJB5
LocusID (NCBI) 25822
Atlas_Id 46964
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 34989641 and ends at 34998433 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJB5   14887
Cards
Entrez_Gene (NCBI)DNAJB5  25822  DnaJ heat shock protein family (Hsp40) member B5
AliasesHsc40
GeneCards (Weizmann)DNAJB5
Ensembl hg19 (Hinxton)ENSG00000137094 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137094 [Gene_View]  chr9:34989641-34998433 [Contig_View]  DNAJB5 [Vega]
ICGC DataPortalENSG00000137094
TCGA cBioPortalDNAJB5
AceView (NCBI)DNAJB5
Genatlas (Paris)DNAJB5
WikiGenes25822
SOURCE (Princeton)DNAJB5
Genetics Home Reference (NIH)DNAJB5
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJB5  -     chr9:34989641-34998433 +  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJB5  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblDNAJB5 - 9p13.3 [CytoView hg19]  DNAJB5 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIDNAJB5 [Mapview hg19]  DNAJB5 [Mapview hg38]
OMIM611328   
Gene and transcription
Genbank (Entrez)AA351558 AA434108 AF087870 AF088982 AI122943
RefSeq transcript (Entrez)NM_001135004 NM_001135005 NM_001349723 NM_001349724 NM_001349725 NM_012266
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJB5
Cluster EST : UnigeneHs.237506 [ NCBI ]
CGAP (NCI)Hs.237506
Alternative Splicing GalleryENSG00000137094
Gene ExpressionDNAJB5 [ NCBI-GEO ]   DNAJB5 [ EBI - ARRAY_EXPRESS ]   DNAJB5 [ SEEK ]   DNAJB5 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJB5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25822
GTEX Portal (Tissue expression)DNAJB5
Human Protein AtlasENSG00000137094-DNAJB5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75953   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75953  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75953
Splice isoforms : SwissVarO75953
PhosPhoSitePlusO75953
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_C    DnaJ_domain    DnaJ_domain_CS    HSP40/DnaJ_pept-bd   
Domain families : Pfam (Sanger)DnaJ (PF00226)    DnaJ_C (PF01556)   
Domain families : Pfam (NCBI)pfam00226    pfam01556   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJB5
DMDM Disease mutations25822
Blocks (Seattle)DNAJB5
SuperfamilyO75953
Human Protein Atlas [tissue]ENSG00000137094-DNAJB5 [tissue]
Peptide AtlasO75953
IPIIPI00871830   IPI00913945   IPI00016855   IPI00642878   IPI01013838   IPI01013218   IPI00980630   IPI00746725   IPI01015868   IPI01015453   IPI01010508   
Protein Interaction databases
DIP (DOE-UCLA)O75953
IntAct (EBI)O75953
FunCoupENSG00000137094
BioGRIDDNAJB5
STRING (EMBL)DNAJB5
ZODIACDNAJB5
Ontologies - Pathways
QuickGOO75953
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  protein binding  nucleus  cytosol  protein folding  response to unfolded protein  unfolded protein binding  chaperone binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  protein binding  nucleus  cytosol  protein folding  response to unfolded protein  unfolded protein binding  chaperone binding  
NDEx NetworkDNAJB5
Atlas of Cancer Signalling NetworkDNAJB5
Wikipedia pathwaysDNAJB5
Orthology - Evolution
OrthoDB25822
GeneTree (enSembl)ENSG00000137094
Phylogenetic Trees/Animal Genes : TreeFamDNAJB5
HOVERGENO75953
HOGENOMO75953
Homologs : HomoloGeneDNAJB5
Homology/Alignments : Family Browser (UCSC)DNAJB5
Gene fusions - Rearrangements
Fusion: Tumor Portal DNAJB5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJB5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJB5
dbVarDNAJB5
ClinVarDNAJB5
1000_GenomesDNAJB5 
Exome Variant ServerDNAJB5
ExAC (Exome Aggregation Consortium)ENSG00000137094
GNOMAD BrowserENSG00000137094
Genetic variants : HAPMAP25822
Genomic Variants (DGV)DNAJB5 [DGVbeta]
DECIPHERDNAJB5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJB5 
Mutations
ICGC Data PortalDNAJB5 
TCGA Data PortalDNAJB5 
Broad Tumor PortalDNAJB5
OASIS PortalDNAJB5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJB5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJB5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJB5
DgiDB (Drug Gene Interaction Database)DNAJB5
DoCM (Curated mutations)DNAJB5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJB5 (select a term)
intoGenDNAJB5
Cancer3DDNAJB5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611328   
Orphanet
MedgenDNAJB5
Genetic Testing Registry DNAJB5
NextProtO75953 [Medical]
TSGene25822
GENETestsDNAJB5
Target ValidationDNAJB5
Huge Navigator DNAJB5 [HugePedia]
snp3D : Map Gene to Disease25822
BioCentury BCIQDNAJB5
ClinGenDNAJB5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25822
Chemical/Pharm GKB GenePA27417
Clinical trialDNAJB5
Miscellaneous
canSAR (ICR)DNAJB5 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJB5
EVEXDNAJB5
GoPubMedDNAJB5
iHOPDNAJB5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:47:39 CET 2017

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