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DNAJB6 (DnaJ (Hsp40) homolog, subfamily B, member 6)

Identity

Other namesDJ4
DnaJ
HHDJ1
HSJ-2
HSJ2
LGMD1D
LGMD1E
MRJ
MSJ-1
HGNC (Hugo) DNAJB6
LocusID (NCBI) 10049
Location 7q36.3
Location_base_pair Starts at 157129710 and ends at 157179018 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DNAJB6   14888
Cards
Entrez_Gene (NCBI)DNAJB6  10049  DnaJ (Hsp40) homolog, subfamily B, member 6
GeneCards (Weizmann)DNAJB6
Ensembl (Hinxton)ENSG00000105993 [Gene_View]  chr7:157129710-157179018 [Contig_View]  DNAJB6 [Vega]
ICGC DataPortalENSG00000105993
AceView (NCBI)DNAJB6
Genatlas (Paris)DNAJB6
WikiGenes10049
SOURCE (Princeton)NM_005494 NM_058246
Genomic and cartography
GoldenPath (UCSC)DNAJB6  -  7q36.3   chr7:157129710-157179018 +  7q36.3   [Description]    (hg19-Feb_2009)
EnsemblDNAJB6 - 7q36.3 [CytoView]
Mapping of homologs : NCBIDNAJB6 [Mapview]
OMIM603511   611332   
Gene and transcription
Genbank (Entrez)AB014888 AB015798 AB015799 AB209859 AF060703
RefSeq transcript (Entrez)NM_005494 NM_058246
RefSeq genomic (Entrez)AC_000139 NC_000007 NC_018918 NG_032573 NT_007933 NW_001839100 NW_004929334
Consensus coding sequences : CCDS (NCBI)DNAJB6
Cluster EST : UnigeneHs.490745 [ NCBI ]
CGAP (NCI)Hs.490745
Alternative Splicing : Fast-db (Paris)GSHG0027931
Alternative Splicing GalleryENSG00000105993
Gene ExpressionDNAJB6 [ NCBI-GEO ]     DNAJB6 [ SEEK ]   DNAJB6 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75190 (Uniprot)
NextProtO75190  [Medical]
With graphics : InterProO75190
Splice isoforms : SwissVarO75190 (Swissvar)
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain    DnaJ_domain_CS   
Related proteins : CluSTrO75190
Domain families : Pfam (Sanger)DnaJ (PF00226)   
Domain families : Pfam (NCBI)pfam00226   
Domain families : Smart (EMBL)DnaJ (SM00271)  
DMDM Disease mutations10049
Blocks (Seattle)O75190
Human Protein AtlasENSG00000105993
Peptide AtlasO75190
HPRD07107
IPIIPI00024523   IPI00098523   IPI00556073   IPI01012885   IPI00910456   IPI00908622   IPI00909891   IPI00926644   IPI00927277   IPI00926867   IPI00926246   IPI00925863   IPI00926057   IPI00925657   
Protein Interaction databases
DIP (DOE-UCLA)O75190
IntAct (EBI)O75190
FunCoupENSG00000105993
BioGRIDDNAJB6
InParanoidO75190
Interologous Interaction database O75190
IntegromeDBDNAJB6
STRING (EMBL)DNAJB6
Ontologies - Pathways
Ontology : AmiGOATPase activator activity  DNA binding  protein binding  nucleus  nucleolus  cytoplasm  cytosol  protein folding  membrane  Z disc  actin cytoskeleton organization  extracellular matrix organization  heat shock protein binding  positive regulation of ATPase activity  protein localization to nucleus  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  intermediate filament organization  negative regulation of transcription, DNA-templated  perinuclear region of cytoplasm  unfolded protein binding  chaperone binding  chaperone binding  chorio-allantoic fusion  syncytiotrophoblast cell differentiation involved in labyrinthine layer development  chorion development  negative regulation of inclusion body assembly  
Ontology : EGO-EBIATPase activator activity  DNA binding  protein binding  nucleus  nucleolus  cytoplasm  cytosol  protein folding  membrane  Z disc  actin cytoskeleton organization  extracellular matrix organization  heat shock protein binding  positive regulation of ATPase activity  protein localization to nucleus  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  intermediate filament organization  negative regulation of transcription, DNA-templated  perinuclear region of cytoplasm  unfolded protein binding  chaperone binding  chaperone binding  chorio-allantoic fusion  syncytiotrophoblast cell differentiation involved in labyrinthine layer development  chorion development  negative regulation of inclusion body assembly  
Pathways : BIOCARTAPrion Pathway [Genes]   
Protein Interaction DatabaseDNAJB6
Wikipedia pathwaysDNAJB6
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)DNAJB6
SNP (GeneSNP Utah)DNAJB6
SNP : HGBaseDNAJB6
Genetic variants : HAPMAPDNAJB6
1000_GenomesDNAJB6 
ICGC programENSG00000105993 
CONAN: Copy Number AnalysisDNAJB6 
Somatic Mutations in Cancer : COSMICDNAJB6 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDDNAJB6
OMIM603511    611332   
MedgenDNAJB6
GENETestsDNAJB6
Disease Genetic AssociationDNAJB6
Huge Navigator DNAJB6 [HugePedia]  DNAJB6 [HugeCancerGEM]
Genomic VariantsDNAJB6  DNAJB6 [DGVbeta]
Exome VariantDNAJB6
dbVarDNAJB6
ClinVarDNAJB6
snp3D : Map Gene to Disease10049
General knowledge
Homologs : HomoloGeneDNAJB6
Homology/Alignments : Family Browser (UCSC)DNAJB6
Phylogenetic Trees/Animal Genes : TreeFamDNAJB6
Chemical/Protein Interactions : CTD10049
Chemical/Pharm GKB GenePA27418
Clinical trialDNAJB6
Cancer Resource (Charite)ENSG00000105993
Other databases
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
CoreMineDNAJB6
iHOPDNAJB6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:43:03 CEST 2014

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