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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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DNAJB6 (DnaJ (Hsp40) homolog, subfamily B, member 6)

Identity

Other namesDJ4
DnaJ
HHDJ1
HSJ-2
HSJ2
LGMD1D
LGMD1E
MRJ
MSJ-1
HGNC (Hugo) DNAJB6
LocusID (NCBI) 10049
Location 7q36.3
Location_base_pair Starts at 157129710 and ends at 157179018 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DNAJB6   14888
Cards
Entrez_Gene (NCBI)DNAJB6  10049  DnaJ (Hsp40) homolog, subfamily B, member 6
GeneCards (Weizmann)DNAJB6
Ensembl hg19 (Hinxton)ENSG00000105993 [Gene_View]  chr7:157129710-157179018 [Contig_View]  DNAJB6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105993 [Gene_View]  chr7:157129710-157179018 [Contig_View]  DNAJB6 [Vega]
ICGC DataPortalENSG00000105993
cBioPortalDNAJB6
AceView (NCBI)DNAJB6
Genatlas (Paris)DNAJB6
WikiGenes10049
SOURCE (Princeton)DNAJB6
Genomic and cartography
GoldenPath hg19 (UCSC)DNAJB6  -     chr7:157129710-157179018 +  7q36.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DNAJB6  -     7q36.3   [Description]    (hg38-Dec_2013)
EnsemblDNAJB6 - 7q36.3 [CytoView hg19]  DNAJB6 - 7q36.3 [CytoView hg38]
Mapping of homologs : NCBIDNAJB6 [Mapview hg19]  DNAJB6 [Mapview hg38]
OMIM603511   611332   
Gene and transcription
Genbank (Entrez)AB014888 AB015798 AB015799 AB209859 AF060703
RefSeq transcript (Entrez)NM_005494 NM_058246
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_032573 NT_007933 NW_004929334
Consensus coding sequences : CCDS (NCBI)DNAJB6
Cluster EST : UnigeneHs.490745 [ NCBI ]
CGAP (NCI)Hs.490745
Alternative Splicing : Fast-db (Paris)GSHG0027931
Alternative Splicing GalleryENSG00000105993
Gene ExpressionDNAJB6 [ NCBI-GEO ]     DNAJB6 [ SEEK ]   DNAJB6 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75190 (Uniprot)
NextProtO75190  [Medical]
With graphics : InterProO75190
Splice isoforms : SwissVarO75190 (Swissvar)
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain    DnaJ_domain_CS   
Related proteins : CluSTrO75190
Domain families : Pfam (Sanger)DnaJ (PF00226)   
Domain families : Pfam (NCBI)pfam00226   
Domain families : Smart (EMBL)DnaJ (SM00271)  
DMDM Disease mutations10049
Blocks (Seattle)O75190
Human Protein AtlasENSG00000105993
Peptide AtlasO75190
HPRD07107
IPIIPI00024523   IPI00098523   IPI00556073   IPI01012885   IPI00910456   IPI00908622   IPI00909891   IPI00926644   IPI00927277   IPI00926867   IPI00926246   IPI00925863   IPI00926057   IPI00925657   
Protein Interaction databases
DIP (DOE-UCLA)O75190
IntAct (EBI)O75190
FunCoupENSG00000105993
BioGRIDDNAJB6
IntegromeDBDNAJB6
STRING (EMBL)DNAJB6
Ontologies - Pathways
QuickGOO75190
Ontology : AmiGOATPase activator activity  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  protein folding  membrane  Z disc  heat shock protein binding  positive regulation of ATPase activity  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  intermediate filament organization  perinuclear region of cytoplasm  unfolded protein binding  chaperone binding  chaperone binding  negative regulation of inclusion body assembly  
Ontology : EGO-EBIATPase activator activity  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  protein folding  membrane  Z disc  heat shock protein binding  positive regulation of ATPase activity  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  intermediate filament organization  perinuclear region of cytoplasm  unfolded protein binding  chaperone binding  chaperone binding  negative regulation of inclusion body assembly  
Pathways : BIOCARTAPrion Pathway [Genes]   
Protein Interaction DatabaseDNAJB6
DoCM (Curated mutations)DNAJB6
Wikipedia pathwaysDNAJB6
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerDNAJB6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJB6
dbVarDNAJB6
ClinVarDNAJB6
1000_GenomesDNAJB6 
Exome Variant ServerDNAJB6
SNP (GeneSNP Utah)DNAJB6
SNP : HGBaseDNAJB6
Genetic variants : HAPMAPDNAJB6
Genomic Variants (DGV)DNAJB6 [DGVbeta]
Mutations
ICGC Data PortalENSG00000105993 
Somatic Mutations in Cancer : COSMICDNAJB6 
CONAN: Copy Number AnalysisDNAJB6 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)7:157129710-157179018
Mutations and Diseases : HGMDDNAJB6
OMIM603511    611332   
MedgenDNAJB6
NextProtO75190 [Medical]
GENETestsDNAJB6
Disease Genetic AssociationDNAJB6
Huge Navigator DNAJB6 [HugePedia]  DNAJB6 [HugeCancerGEM]
snp3D : Map Gene to Disease10049
DGIdb (Drug Gene Interaction db)DNAJB6
General knowledge
Homologs : HomoloGeneDNAJB6
Homology/Alignments : Family Browser (UCSC)DNAJB6
Phylogenetic Trees/Animal Genes : TreeFamDNAJB6
Chemical/Protein Interactions : CTD10049
Chemical/Pharm GKB GenePA27418
Clinical trialDNAJB6
Cancer Resource (Charite)ENSG00000105993
Other databases
Probes
Litterature
PubMed75 Pubmed reference(s) in Entrez
CoreMineDNAJB6
GoPubMedDNAJB6
iHOPDNAJB6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:13:44 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.