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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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DNAJB7 (DnaJ (Hsp40) homolog, subfamily B, member 7)

Identity

Other namesDJ5
HSC3
HGNC (Hugo) DNAJB7
LocusID (NCBI) 150353
Location 22q13.2
Location_base_pair Starts at 41255554 and ends at 41258130 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DNAJB7   24986
Cards
Entrez_Gene (NCBI)DNAJB7  150353  DnaJ (Hsp40) homolog, subfamily B, member 7
GeneCards (Weizmann)DNAJB7
Ensembl hg19 (Hinxton)ENSG00000172404 [Gene_View]  chr22:41255554-41258130 [Contig_View]  DNAJB7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172404 [Gene_View]  chr22:41255554-41258130 [Contig_View]  DNAJB7 [Vega]
ICGC DataPortalENSG00000172404
cBioPortalDNAJB7
AceView (NCBI)DNAJB7
Genatlas (Paris)DNAJB7
WikiGenes150353
SOURCE (Princeton)DNAJB7
Genomic and cartography
GoldenPath hg19 (UCSC)DNAJB7  -     chr22:41255554-41258130 -  22q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DNAJB7  -     22q13.2   [Description]    (hg38-Dec_2013)
EnsemblDNAJB7 - 22q13.2 [CytoView hg19]  DNAJB7 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBIDNAJB7 [Mapview hg19]  DNAJB7 [Mapview hg38]
OMIM611336   
Gene and transcription
Genbank (Entrez)AF085232 BC112135 CR456468 CU013018 CU013306
RefSeq transcript (Entrez)NM_145174
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NG_028221 NT_011520 NW_001838745 NW_004929430
Consensus coding sequences : CCDS (NCBI)DNAJB7
Cluster EST : UnigeneHs.585042 [ NCBI ]
CGAP (NCI)Hs.585042
Alternative Splicing : Fast-db (Paris)GSHG0020417
Alternative Splicing GalleryENSG00000172404
Gene ExpressionDNAJB7 [ NCBI-GEO ]     DNAJB7 [ SEEK ]   DNAJB7 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6W7 (Uniprot)
NextProtQ7Z6W7  [Medical]
With graphics : InterProQ7Z6W7
Splice isoforms : SwissVarQ7Z6W7 (Swissvar)
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain    DnaJ_domain_CS   
Related proteins : CluSTrQ7Z6W7
Domain families : Pfam (Sanger)DnaJ (PF00226)   
Domain families : Pfam (NCBI)pfam00226   
Domain families : Smart (EMBL)DnaJ (SM00271)  
DMDM Disease mutations150353
Blocks (Seattle)Q7Z6W7
Human Protein AtlasENSG00000172404
Peptide AtlasQ7Z6W7
HPRD07010
IPIIPI00103726   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6W7
IntAct (EBI)Q7Z6W7
FunCoupENSG00000172404
BioGRIDDNAJB7
IntegromeDBDNAJB7
STRING (EMBL)DNAJB7
Ontologies - Pathways
QuickGOQ7Z6W7
Ontology : AmiGOchaperone binding  
Ontology : EGO-EBIchaperone binding  
Protein Interaction DatabaseDNAJB7
DoCM (Curated mutations)DNAJB7
Wikipedia pathwaysDNAJB7
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerDNAJB7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJB7
dbVarDNAJB7
ClinVarDNAJB7
1000_GenomesDNAJB7 
Exome Variant ServerDNAJB7
SNP (GeneSNP Utah)DNAJB7
SNP : HGBaseDNAJB7
Genetic variants : HAPMAPDNAJB7
Genomic Variants (DGV)DNAJB7 [DGVbeta]
Mutations
ICGC Data PortalENSG00000172404 
Somatic Mutations in Cancer : COSMICDNAJB7 
CONAN: Copy Number AnalysisDNAJB7 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)22:41255554-41258130
Mutations and Diseases : HGMDDNAJB7
OMIM611336   
MedgenDNAJB7
NextProtQ7Z6W7 [Medical]
GENETestsDNAJB7
Disease Genetic AssociationDNAJB7
Huge Navigator DNAJB7 [HugePedia]  DNAJB7 [HugeCancerGEM]
snp3D : Map Gene to Disease150353
DGIdb (Drug Gene Interaction db)DNAJB7
General knowledge
Homologs : HomoloGeneDNAJB7
Homology/Alignments : Family Browser (UCSC)DNAJB7
Phylogenetic Trees/Animal Genes : TreeFamDNAJB7
Chemical/Protein Interactions : CTD150353
Chemical/Pharm GKB GenePA134961522
Clinical trialDNAJB7
Cancer Resource (Charite)ENSG00000172404
Other databases
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
CoreMineDNAJB7
GoPubMedDNAJB7
iHOPDNAJB7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 15:30:24 CET 2015

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