Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DNAJB8 (DnaJ heat shock protein family (Hsp40) member B8)

Identity

Alias_namesDnaJ (Hsp40) homolog
Alias_symbol (synonym)MGC33884
CT156
Other aliasDJ6
HGNC (Hugo) DNAJB8
LocusID (NCBI) 165721
Atlas_Id 47309
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 128462432 and ends at 128467248 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJB8   23699
Cards
Entrez_Gene (NCBI)DNAJB8  165721  DnaJ heat shock protein family (Hsp40) member B8
AliasesCT156; DJ6
GeneCards (Weizmann)DNAJB8
Ensembl hg19 (Hinxton)ENSG00000179407 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179407 [Gene_View]  chr3:128462432-128467248 [Contig_View]  DNAJB8 [Vega]
ICGC DataPortalENSG00000179407
TCGA cBioPortalDNAJB8
AceView (NCBI)DNAJB8
Genatlas (Paris)DNAJB8
WikiGenes165721
SOURCE (Princeton)DNAJB8
Genetics Home Reference (NIH)DNAJB8
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJB8  -     chr3:128462432-128467248 -  3q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJB8  -     3q21.3   [Description]    (hg19-Feb_2009)
EnsemblDNAJB8 - 3q21.3 [CytoView hg19]  DNAJB8 - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBIDNAJB8 [Mapview hg19]  DNAJB8 [Mapview hg38]
OMIM611337   
Gene and transcription
Genbank (Entrez)AI188219 AK125946 AK126068 BC029521 BC050288
RefSeq transcript (Entrez)NM_153330
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJB8
Cluster EST : UnigeneHs.518241 [ NCBI ]
CGAP (NCI)Hs.518241
Alternative Splicing GalleryENSG00000179407
Gene ExpressionDNAJB8 [ NCBI-GEO ]   DNAJB8 [ EBI - ARRAY_EXPRESS ]   DNAJB8 [ SEEK ]   DNAJB8 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJB8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165721
GTEX Portal (Tissue expression)DNAJB8
Human Protein AtlasENSG00000179407-DNAJB8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHS0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHS0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHS0
Splice isoforms : SwissVarQ8NHS0
PhosPhoSitePlusQ8NHS0
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain    DnaJ_domain_CS   
Domain families : Pfam (Sanger)DnaJ (PF00226)   
Domain families : Pfam (NCBI)pfam00226   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJB8
DMDM Disease mutations165721
Blocks (Seattle)DNAJB8
PDB (SRS)2DMX   
PDB (PDBSum)2DMX   
PDB (IMB)2DMX   
PDB (RSDB)2DMX   
Structural Biology KnowledgeBase2DMX   
SCOP (Structural Classification of Proteins)2DMX   
CATH (Classification of proteins structures)2DMX   
SuperfamilyQ8NHS0
Human Protein Atlas [tissue]ENSG00000179407-DNAJB8 [tissue]
Peptide AtlasQ8NHS0
HPRD06684
IPIIPI00169308   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHS0
IntAct (EBI)Q8NHS0
FunCoupENSG00000179407
BioGRIDDNAJB8
STRING (EMBL)DNAJB8
ZODIACDNAJB8
Ontologies - Pathways
QuickGOQ8NHS0
Ontology : AmiGOnucleus  cytosol  protein binding involved in protein folding  unfolded protein binding  chaperone binding  chaperone-mediated protein folding  negative regulation of inclusion body assembly  
Ontology : EGO-EBInucleus  cytosol  protein binding involved in protein folding  unfolded protein binding  chaperone binding  chaperone-mediated protein folding  negative regulation of inclusion body assembly  
NDEx NetworkDNAJB8
Atlas of Cancer Signalling NetworkDNAJB8
Wikipedia pathwaysDNAJB8
Orthology - Evolution
OrthoDB165721
GeneTree (enSembl)ENSG00000179407
Phylogenetic Trees/Animal Genes : TreeFamDNAJB8
HOVERGENQ8NHS0
HOGENOMQ8NHS0
Homologs : HomoloGeneDNAJB8
Homology/Alignments : Family Browser (UCSC)DNAJB8
Gene fusions - Rearrangements
Fusion: Tumor Portal DNAJB8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJB8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJB8
dbVarDNAJB8
ClinVarDNAJB8
1000_GenomesDNAJB8 
Exome Variant ServerDNAJB8
ExAC (Exome Aggregation Consortium)ENSG00000179407
GNOMAD BrowserENSG00000179407
Genetic variants : HAPMAP165721
Genomic Variants (DGV)DNAJB8 [DGVbeta]
DECIPHERDNAJB8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJB8 
Mutations
ICGC Data PortalDNAJB8 
TCGA Data PortalDNAJB8 
Broad Tumor PortalDNAJB8
OASIS PortalDNAJB8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJB8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJB8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJB8
DgiDB (Drug Gene Interaction Database)DNAJB8
DoCM (Curated mutations)DNAJB8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJB8 (select a term)
intoGenDNAJB8
Cancer3DDNAJB8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611337   
Orphanet
MedgenDNAJB8
Genetic Testing Registry DNAJB8
NextProtQ8NHS0 [Medical]
TSGene165721
GENETestsDNAJB8
Target ValidationDNAJB8
Huge Navigator DNAJB8 [HugePedia]
snp3D : Map Gene to Disease165721
BioCentury BCIQDNAJB8
ClinGenDNAJB8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD165721
Chemical/Pharm GKB GenePA134881798
Clinical trialDNAJB8
Miscellaneous
canSAR (ICR)DNAJB8 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJB8
EVEXDNAJB8
GoPubMedDNAJB8
iHOPDNAJB8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:47:39 CET 2017

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