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DNAJB9 (DnaJ heat shock protein family (Hsp40) member B9)

Identity

Alias_namesMDG1
DnaJ (Hsp40) homolog
Other aliasERdj4
MDG-1
MST049
MSTP049
HGNC (Hugo) DNAJB9
LocusID (NCBI) 4189
Atlas_Id 47161
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 108569745 and ends at 108574850 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DNAJB9 (7q31.1) / DNAJB9 (7q31.1)DNAJB9 (7q31.1) / TPP1 (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJB9   6968
Cards
Entrez_Gene (NCBI)DNAJB9  4189  DnaJ heat shock protein family (Hsp40) member B9
AliasesERdj4; MDG-1; MDG1; MST049; 
MSTP049
GeneCards (Weizmann)DNAJB9
Ensembl hg19 (Hinxton)ENSG00000128590 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128590 [Gene_View]  chr7:108569745-108574850 [Contig_View]  DNAJB9 [Vega]
ICGC DataPortalENSG00000128590
TCGA cBioPortalDNAJB9
AceView (NCBI)DNAJB9
Genatlas (Paris)DNAJB9
WikiGenes4189
SOURCE (Princeton)DNAJB9
Genetics Home Reference (NIH)DNAJB9
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJB9  -     chr7:108569745-108574850 +  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJB9  -     7q31.1   [Description]    (hg19-Feb_2009)
EnsemblDNAJB9 - 7q31.1 [CytoView hg19]  DNAJB9 - 7q31.1 [CytoView hg38]
Mapping of homologs : NCBIDNAJB9 [Mapview hg19]  DNAJB9 [Mapview hg38]
OMIM602634   
Gene and transcription
Genbank (Entrez)AB026908 AF083247 AF093824 AK092204 AL080081
RefSeq transcript (Entrez)NM_012328
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJB9
Cluster EST : UnigeneHs.741182 [ NCBI ]
CGAP (NCI)Hs.741182
Alternative Splicing GalleryENSG00000128590
Gene ExpressionDNAJB9 [ NCBI-GEO ]   DNAJB9 [ EBI - ARRAY_EXPRESS ]   DNAJB9 [ SEEK ]   DNAJB9 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJB9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4189
GTEX Portal (Tissue expression)DNAJB9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBS3
Splice isoforms : SwissVarQ9UBS3
PhosPhoSitePlusQ9UBS3
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain    DnaJ_domain_CS   
Domain families : Pfam (Sanger)DnaJ (PF00226)   
Domain families : Pfam (NCBI)pfam00226   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJB9
DMDM Disease mutations4189
Blocks (Seattle)DNAJB9
PDB (SRS)2CTR   
PDB (PDBSum)2CTR   
PDB (IMB)2CTR   
PDB (RSDB)2CTR   
Structural Biology KnowledgeBase2CTR   
SCOP (Structural Classification of Proteins)2CTR   
CATH (Classification of proteins structures)2CTR   
SuperfamilyQ9UBS3
Human Protein AtlasENSG00000128590
Peptide AtlasQ9UBS3
HPRD07047
IPIIPI00017608   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBS3
IntAct (EBI)Q9UBS3
FunCoupENSG00000128590
BioGRIDDNAJB9
STRING (EMBL)DNAJB9
ZODIACDNAJB9
Ontologies - Pathways
QuickGOQ9UBS3
Ontology : AmiGOprotein binding  nucleolus  cytoplasm  endoplasmic reticulum  endoplasmic reticulum lumen  endoplasmic reticulum membrane  ubiquitin-dependent ERAD pathway  IRE1-mediated unfolded protein response  misfolded protein binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  nucleolus  cytoplasm  endoplasmic reticulum  endoplasmic reticulum lumen  endoplasmic reticulum membrane  ubiquitin-dependent ERAD pathway  IRE1-mediated unfolded protein response  misfolded protein binding  extracellular exosome  
NDEx NetworkDNAJB9
Atlas of Cancer Signalling NetworkDNAJB9
Wikipedia pathwaysDNAJB9
Orthology - Evolution
OrthoDB4189
GeneTree (enSembl)ENSG00000128590
Phylogenetic Trees/Animal Genes : TreeFamDNAJB9
HOVERGENQ9UBS3
HOGENOMQ9UBS3
Homologs : HomoloGeneDNAJB9
Homology/Alignments : Family Browser (UCSC)DNAJB9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJB9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJB9
dbVarDNAJB9
ClinVarDNAJB9
1000_GenomesDNAJB9 
Exome Variant ServerDNAJB9
ExAC (Exome Aggregation Consortium)DNAJB9 (select the gene name)
Genetic variants : HAPMAP4189
Genomic Variants (DGV)DNAJB9 [DGVbeta]
DECIPHERDNAJB9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJB9 
Mutations
ICGC Data PortalDNAJB9 
TCGA Data PortalDNAJB9 
Broad Tumor PortalDNAJB9
OASIS PortalDNAJB9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJB9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJB9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJB9
DgiDB (Drug Gene Interaction Database)DNAJB9
DoCM (Curated mutations)DNAJB9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJB9 (select a term)
intoGenDNAJB9
Cancer3DDNAJB9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602634   
Orphanet
MedgenDNAJB9
Genetic Testing Registry DNAJB9
NextProtQ9UBS3 [Medical]
TSGene4189
GENETestsDNAJB9
Target ValidationDNAJB9
Huge Navigator DNAJB9 [HugePedia]
snp3D : Map Gene to Disease4189
BioCentury BCIQDNAJB9
ClinGenDNAJB9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4189
Chemical/Pharm GKB GenePA27419
Clinical trialDNAJB9
Miscellaneous
canSAR (ICR)DNAJB9 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJB9
EVEXDNAJB9
GoPubMedDNAJB9
iHOPDNAJB9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:31:26 CEST 2017

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