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DNAJC11 (DnaJ heat shock protein family (Hsp40) member C11)

Identity

Alias_namesDnaJ (Hsp40) homolog
Alias_symbol (synonym)FLJ10737
Other aliasdJ126A5.1
HGNC (Hugo) DNAJC11
LocusID (NCBI) 55735
Atlas_Id 43792
Location 1p36.31  [Link to chromosome band 1p36]
Location_base_pair Starts at 6634168 and ends at 6701906 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DNAJC11 (1p36.31) / LDB2 (4p15.32)DNAJC11 (1p36.31) / NOTCH2 (1p12)NOL9 (1p36.31) / DNAJC11 (1p36.31)
PER3 (1p36.23) / DNAJC11 (1p36.31)PEX11B (1q21.1) / DNAJC11 (1p36.31)NOL9 1p36.31 / DNAJC11 1p36.31
PER3 1p36.23 / DNAJC11 1p36.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC11   25570
Cards
Entrez_Gene (NCBI)DNAJC11  55735  DnaJ heat shock protein family (Hsp40) member C11
AliasesdJ126A5.1
GeneCards (Weizmann)DNAJC11
Ensembl hg19 (Hinxton)ENSG00000007923 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000007923 [Gene_View]  chr1:6634168-6701906 [Contig_View]  DNAJC11 [Vega]
ICGC DataPortalENSG00000007923
TCGA cBioPortalDNAJC11
AceView (NCBI)DNAJC11
Genatlas (Paris)DNAJC11
WikiGenes55735
SOURCE (Princeton)DNAJC11
Genetics Home Reference (NIH)DNAJC11
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJC11  -     chr1:6634168-6701906 -  1p36.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJC11  -     1p36.31   [Description]    (hg19-Feb_2009)
EnsemblDNAJC11 - 1p36.31 [CytoView hg19]  DNAJC11 - 1p36.31 [CytoView hg38]
Mapping of homologs : NCBIDNAJC11 [Mapview hg19]  DNAJC11 [Mapview hg38]
OMIM614827   
Gene and transcription
Genbank (Entrez)AF052158 AF306694 AF306695 AF306696 AK001599
RefSeq transcript (Entrez)NM_018198
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJC11
Cluster EST : UnigeneHs.462640 [ NCBI ]
CGAP (NCI)Hs.462640
Alternative Splicing GalleryENSG00000007923
Gene ExpressionDNAJC11 [ NCBI-GEO ]   DNAJC11 [ EBI - ARRAY_EXPRESS ]   DNAJC11 [ SEEK ]   DNAJC11 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55735
GTEX Portal (Tissue expression)DNAJC11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVH1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVH1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVH1
Splice isoforms : SwissVarQ9NVH1
PhosPhoSitePlusQ9NVH1
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ-like_C11_C    DnaJ_domain    DnaJ_domain_CS   
Domain families : Pfam (Sanger)DnaJ (PF00226)    DUF3395 (PF11875)   
Domain families : Pfam (NCBI)pfam00226    pfam11875   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJC11
DMDM Disease mutations55735
Blocks (Seattle)DNAJC11
SuperfamilyQ9NVH1
Human Protein AtlasENSG00000007923
Peptide AtlasQ9NVH1
HPRD07112
IPIIPI00465290   IPI00607744   IPI00333016   IPI01010968   IPI01009316   IPI00027984   IPI00477887   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVH1
IntAct (EBI)Q9NVH1
FunCoupENSG00000007923
BioGRIDDNAJC11
STRING (EMBL)DNAJC11
ZODIACDNAJC11
Ontologies - Pathways
QuickGOQ9NVH1
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial inner membrane  extracellular exosome  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial inner membrane  extracellular exosome  
NDEx NetworkDNAJC11
Atlas of Cancer Signalling NetworkDNAJC11
Wikipedia pathwaysDNAJC11
Orthology - Evolution
OrthoDB55735
GeneTree (enSembl)ENSG00000007923
Phylogenetic Trees/Animal Genes : TreeFamDNAJC11
HOVERGENQ9NVH1
HOGENOMQ9NVH1
Homologs : HomoloGeneDNAJC11
Homology/Alignments : Family Browser (UCSC)DNAJC11
Gene fusions - Rearrangements
Fusion : MitelmanDNAJC11/NOTCH2 [1p36.31/1p12]  
Fusion : MitelmanNOL9/DNAJC11 [1p36.31/1p36.31]  [t(1;1)(p36;p36)]  
Fusion : MitelmanPER3/DNAJC11 [1p36.23/1p36.31]  [t(1;1)(p36;p36)]  
Fusion: TCGANOL9 1p36.31 DNAJC11 1p36.31 HNSC
Fusion: TCGAPER3 1p36.23 DNAJC11 1p36.31 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC11
dbVarDNAJC11
ClinVarDNAJC11
1000_GenomesDNAJC11 
Exome Variant ServerDNAJC11
ExAC (Exome Aggregation Consortium)DNAJC11 (select the gene name)
Genetic variants : HAPMAP55735
Genomic Variants (DGV)DNAJC11 [DGVbeta]
DECIPHERDNAJC11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJC11 
Mutations
ICGC Data PortalDNAJC11 
TCGA Data PortalDNAJC11 
Broad Tumor PortalDNAJC11
OASIS PortalDNAJC11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJC11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch DNAJC11
DgiDB (Drug Gene Interaction Database)DNAJC11
DoCM (Curated mutations)DNAJC11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC11 (select a term)
intoGenDNAJC11
Cancer3DDNAJC11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614827   
Orphanet
MedgenDNAJC11
Genetic Testing Registry DNAJC11
NextProtQ9NVH1 [Medical]
TSGene55735
GENETestsDNAJC11
Target ValidationDNAJC11
Huge Navigator DNAJC11 [HugePedia]
snp3D : Map Gene to Disease55735
BioCentury BCIQDNAJC11
ClinGenDNAJC11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55735
Chemical/Pharm GKB GenePA134893823
Clinical trialDNAJC11
Miscellaneous
canSAR (ICR)DNAJC11 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC11
EVEXDNAJC11
GoPubMedDNAJC11
iHOPDNAJC11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:31:27 CEST 2017

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