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DNAJC12 (DnaJ heat shock protein family (Hsp40) member C12)

Identity

Alias_namesDnaJ (Hsp40) homolog
Alias_symbol (synonym)JDP1
Other aliasHPANBH4
HGNC (Hugo) DNAJC12
LocusID (NCBI) 56521
Atlas_Id 46717
Location 10q21.3  [Link to chromosome band 10q21]
Location_base_pair Starts at 67796669 and ends at 67838179 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC12   28908
Cards
Entrez_Gene (NCBI)DNAJC12  56521  DnaJ heat shock protein family (Hsp40) member C12
AliasesHPANBH4; JDP1
GeneCards (Weizmann)DNAJC12
Ensembl hg19 (Hinxton)ENSG00000108176 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108176 [Gene_View]  chr10:67796669-67838179 [Contig_View]  DNAJC12 [Vega]
ICGC DataPortalENSG00000108176
TCGA cBioPortalDNAJC12
AceView (NCBI)DNAJC12
Genatlas (Paris)DNAJC12
WikiGenes56521
SOURCE (Princeton)DNAJC12
Genetics Home Reference (NIH)DNAJC12
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJC12  -     chr10:67796669-67838179 -  10q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJC12  -     10q21.3   [Description]    (hg19-Feb_2009)
EnsemblDNAJC12 - 10q21.3 [CytoView hg19]  DNAJC12 - 10q21.3 [CytoView hg38]
Mapping of homologs : NCBIDNAJC12 [Mapview hg19]  DNAJC12 [Mapview hg38]
OMIM606060   617384   
Gene and transcription
Genbank (Entrez)AF176012 AF176013 AK289537 BC017018 CB121724
RefSeq transcript (Entrez)NM_021800 NM_201262
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJC12
Cluster EST : UnigeneHs.260720 [ NCBI ]
CGAP (NCI)Hs.260720
Alternative Splicing GalleryENSG00000108176
Gene ExpressionDNAJC12 [ NCBI-GEO ]   DNAJC12 [ EBI - ARRAY_EXPRESS ]   DNAJC12 [ SEEK ]   DNAJC12 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56521
GTEX Portal (Tissue expression)DNAJC12
Human Protein AtlasENSG00000108176-DNAJC12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKB3
Splice isoforms : SwissVarQ9UKB3
PhosPhoSitePlusQ9UKB3
Domaine pattern : Prosite (Expaxy)DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain   
Domain families : Pfam (Sanger)DnaJ (PF00226)   
Domain families : Pfam (NCBI)pfam00226   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJC12
DMDM Disease mutations56521
Blocks (Seattle)DNAJC12
PDB (SRS)2CTQ   
PDB (PDBSum)2CTQ   
PDB (IMB)2CTQ   
PDB (RSDB)2CTQ   
Structural Biology KnowledgeBase2CTQ   
SCOP (Structural Classification of Proteins)2CTQ   
CATH (Classification of proteins structures)2CTQ   
SuperfamilyQ9UKB3
Human Protein Atlas [tissue]ENSG00000108176-DNAJC12 [tissue]
Peptide AtlasQ9UKB3
HPRD06930
IPIIPI00029149   IPI00220169   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKB3
IntAct (EBI)Q9UKB3
FunCoupENSG00000108176
BioGRIDDNAJC12
STRING (EMBL)DNAJC12
ZODIACDNAJC12
Ontologies - Pathways
QuickGOQ9UKB3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkDNAJC12
Atlas of Cancer Signalling NetworkDNAJC12
Wikipedia pathwaysDNAJC12
Orthology - Evolution
OrthoDB56521
GeneTree (enSembl)ENSG00000108176
Phylogenetic Trees/Animal Genes : TreeFamDNAJC12
HOVERGENQ9UKB3
HOGENOMQ9UKB3
Homologs : HomoloGeneDNAJC12
Homology/Alignments : Family Browser (UCSC)DNAJC12
Gene fusions - Rearrangements
Tumor Fusion PortalDNAJC12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC12
dbVarDNAJC12
ClinVarDNAJC12
1000_GenomesDNAJC12 
Exome Variant ServerDNAJC12
ExAC (Exome Aggregation Consortium)ENSG00000108176
GNOMAD BrowserENSG00000108176
Genetic variants : HAPMAP56521
Genomic Variants (DGV)DNAJC12 [DGVbeta]
DECIPHERDNAJC12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJC12 
Mutations
ICGC Data PortalDNAJC12 
TCGA Data PortalDNAJC12 
Broad Tumor PortalDNAJC12
OASIS PortalDNAJC12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJC12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJC12
DgiDB (Drug Gene Interaction Database)DNAJC12
DoCM (Curated mutations)DNAJC12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC12 (select a term)
intoGenDNAJC12
Cancer3DDNAJC12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606060    617384   
Orphanet
DisGeNETDNAJC12
MedgenDNAJC12
Genetic Testing Registry DNAJC12
NextProtQ9UKB3 [Medical]
TSGene56521
GENETestsDNAJC12
Target ValidationDNAJC12
Huge Navigator DNAJC12 [HugePedia]
snp3D : Map Gene to Disease56521
BioCentury BCIQDNAJC12
ClinGenDNAJC12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56521
Chemical/Pharm GKB GenePA134931354
Clinical trialDNAJC12
Miscellaneous
canSAR (ICR)DNAJC12 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC12
EVEXDNAJC12
GoPubMedDNAJC12
iHOPDNAJC12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:10:52 CET 2017

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