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DNAJC13 (DnaJ heat shock protein family (Hsp40) member C13)

Identity

Alias_namesDnaJ (Hsp40) homolog
Alias_symbol (synonym)RME8
KIAA0678
Other aliasPARK21
HGNC (Hugo) DNAJC13
LocusID (NCBI) 23317
Atlas_Id 47312
Location 3q22.1  [Link to chromosome band 3q22]
Location_base_pair Starts at 132136553 and ends at 132257876 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CACNA1A (19p13.2) / DNAJC13 (3q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC13   30343
Cards
Entrez_Gene (NCBI)DNAJC13  23317  DnaJ heat shock protein family (Hsp40) member C13
AliasesPARK21; RME8
GeneCards (Weizmann)DNAJC13
Ensembl hg19 (Hinxton)ENSG00000138246 [Gene_View]  chr3:132136553-132257876 [Contig_View]  DNAJC13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138246 [Gene_View]  chr3:132136553-132257876 [Contig_View]  DNAJC13 [Vega]
ICGC DataPortalENSG00000138246
TCGA cBioPortalDNAJC13
AceView (NCBI)DNAJC13
Genatlas (Paris)DNAJC13
WikiGenes23317
SOURCE (Princeton)DNAJC13
Genetics Home Reference (NIH)DNAJC13
Genomic and cartography
GoldenPath hg19 (UCSC)DNAJC13  -     chr3:132136553-132257876 +  3q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DNAJC13  -     3q22.1   [Description]    (hg38-Dec_2013)
EnsemblDNAJC13 - 3q22.1 [CytoView hg19]  DNAJC13 - 3q22.1 [CytoView hg38]
Mapping of homologs : NCBIDNAJC13 [Mapview hg19]  DNAJC13 [Mapview hg38]
OMIM614334   616361   
Gene and transcription
Genbank (Entrez)AB014578 AI189887 AK023168 AK098729 AK125330
RefSeq transcript (Entrez)NM_015268
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)DNAJC13
Cluster EST : UnigeneHs.12707 [ NCBI ]
CGAP (NCI)Hs.12707
Alternative Splicing GalleryENSG00000138246
Gene ExpressionDNAJC13 [ NCBI-GEO ]   DNAJC13 [ EBI - ARRAY_EXPRESS ]   DNAJC13 [ SEEK ]   DNAJC13 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23317
GTEX Portal (Tissue expression)DNAJC13
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75165   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75165  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75165
Splice isoforms : SwissVarO75165
PhosPhoSitePlusO75165
Domaine pattern : Prosite (Expaxy)DNAJ_2 (PS50076)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    DnaJ_domain    DUF4339    GYF   
Domain families : Pfam (Sanger)DnaJ (PF00226)    DUF4339 (PF14237)   
Domain families : Pfam (NCBI)pfam00226    pfam14237   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJC13
DMDM Disease mutations23317
Blocks (Seattle)DNAJC13
SuperfamilyO75165
Human Protein AtlasENSG00000138246
Peptide AtlasO75165
HPRD10915
IPIIPI00307259   IPI01015274   IPI00410315   IPI00966273   IPI00964798   
Protein Interaction databases
DIP (DOE-UCLA)O75165
IntAct (EBI)O75165
FunCoupENSG00000138246
BioGRIDDNAJC13
STRING (EMBL)DNAJC13
ZODIACDNAJC13
Ontologies - Pathways
QuickGOO75165
Ontology : AmiGOosteoblast differentiation  protein binding  cytoplasm  lysosomal membrane  endosome organization  endosome membrane  protein transport  membrane  early endosome membrane  intracellular membrane-bounded organelle  extracellular exosome  WASH complex  regulation of early endosome to recycling endosome transport  regulation of early endosome to late endosome transport  
Ontology : EGO-EBIosteoblast differentiation  protein binding  cytoplasm  lysosomal membrane  endosome organization  endosome membrane  protein transport  membrane  early endosome membrane  intracellular membrane-bounded organelle  extracellular exosome  WASH complex  regulation of early endosome to recycling endosome transport  regulation of early endosome to late endosome transport  
NDEx NetworkDNAJC13
Atlas of Cancer Signalling NetworkDNAJC13
Wikipedia pathwaysDNAJC13
Orthology - Evolution
OrthoDB23317
GeneTree (enSembl)ENSG00000138246
Phylogenetic Trees/Animal Genes : TreeFamDNAJC13
HOVERGENO75165
HOGENOMO75165
Homologs : HomoloGeneDNAJC13
Homology/Alignments : Family Browser (UCSC)DNAJC13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC13
dbVarDNAJC13
ClinVarDNAJC13
1000_GenomesDNAJC13 
Exome Variant ServerDNAJC13
ExAC (Exome Aggregation Consortium)DNAJC13 (select the gene name)
Genetic variants : HAPMAP23317
Genomic Variants (DGV)DNAJC13 [DGVbeta]
DECIPHER (Syndromes)3:132136553-132257876  ENSG00000138246
CONAN: Copy Number AnalysisDNAJC13 
Mutations
ICGC Data PortalDNAJC13 
TCGA Data PortalDNAJC13 
Broad Tumor PortalDNAJC13
OASIS PortalDNAJC13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJC13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJC13
DgiDB (Drug Gene Interaction Database)DNAJC13
DoCM (Curated mutations)DNAJC13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC13 (select a term)
intoGenDNAJC13
Cancer3DDNAJC13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614334    616361   
Orphanet23022   
MedgenDNAJC13
Genetic Testing Registry DNAJC13
NextProtO75165 [Medical]
TSGene23317
GENETestsDNAJC13
Huge Navigator DNAJC13 [HugePedia]
snp3D : Map Gene to Disease23317
BioCentury BCIQDNAJC13
ClinGenDNAJC13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23317
Chemical/Pharm GKB GenePA134947358
Clinical trialDNAJC13
Miscellaneous
canSAR (ICR)DNAJC13 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC13
EVEXDNAJC13
GoPubMedDNAJC13
iHOPDNAJC13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:59:07 CEST 2017

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