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DNAJC16 (DnaJ heat shock protein family (Hsp40) member C16)

Identity

Alias_namesDnaJ (Hsp40) homolog
Alias_symbol (synonym)KIAA0962
Other alias-
HGNC (Hugo) DNAJC16
LocusID (NCBI) 23341
Atlas_Id 47088
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 15526813 and ends at 15571733 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC16   29157
Cards
Entrez_Gene (NCBI)DNAJC16  23341  DnaJ heat shock protein family (Hsp40) member C16
Aliases
GeneCards (Weizmann)DNAJC16
Ensembl hg19 (Hinxton)ENSG00000116138 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116138 [Gene_View]  ENSG00000116138 [Sequence]  chr1:15526813-15571733 [Contig_View]  DNAJC16 [Vega]
ICGC DataPortalENSG00000116138
TCGA cBioPortalDNAJC16
AceView (NCBI)DNAJC16
Genatlas (Paris)DNAJC16
WikiGenes23341
SOURCE (Princeton)DNAJC16
Genetics Home Reference (NIH)DNAJC16
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJC16  -     chr1:15526813-15571733 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJC16  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblDNAJC16 - 1p36.21 [CytoView hg19]  DNAJC16 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIDNAJC16 [Mapview hg19]  DNAJC16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB023179 AK022530 AK023805 AK091848 AK292479
RefSeq transcript (Entrez)NM_001287811 NM_015291
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJC16
Cluster EST : UnigeneHs.655410 [ NCBI ]
CGAP (NCI)Hs.655410
Alternative Splicing GalleryENSG00000116138
Gene ExpressionDNAJC16 [ NCBI-GEO ]   DNAJC16 [ EBI - ARRAY_EXPRESS ]   DNAJC16 [ SEEK ]   DNAJC16 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23341
GTEX Portal (Tissue expression)DNAJC16
Human Protein AtlasENSG00000116138-DNAJC16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2G8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2G8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2G8
Splice isoforms : SwissVarQ9Y2G8
PhosPhoSitePlusQ9Y2G8
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)    THIOREDOXIN_2 (PS51352)   
Domains : Interpro (EBI)DnaJ_domain    DnaJ_domain_CS    J_dom_sf    Thioredoxin-like_sf    Thioredoxin_domain   
Domain families : Pfam (Sanger)DnaJ (PF00226)    Thioredoxin (PF00085)   
Domain families : Pfam (NCBI)pfam00226    pfam00085   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJC16
DMDM Disease mutations23341
Blocks (Seattle)DNAJC16
SuperfamilyQ9Y2G8
Human Protein Atlas [tissue]ENSG00000116138-DNAJC16 [tissue]
Peptide AtlasQ9Y2G8
HPRD17202
IPIIPI00006433   IPI00759581   IPI00640786   IPI00646250   IPI01014637   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2G8
IntAct (EBI)Q9Y2G8
FunCoupENSG00000116138
BioGRIDDNAJC16
STRING (EMBL)DNAJC16
ZODIACDNAJC16
Ontologies - Pathways
QuickGOQ9Y2G8
Ontology : AmiGOcell  integral component of membrane  cell redox homeostasis  
Ontology : EGO-EBIcell  integral component of membrane  cell redox homeostasis  
NDEx NetworkDNAJC16
Atlas of Cancer Signalling NetworkDNAJC16
Wikipedia pathwaysDNAJC16
Orthology - Evolution
OrthoDB23341
GeneTree (enSembl)ENSG00000116138
Phylogenetic Trees/Animal Genes : TreeFamDNAJC16
HOVERGENQ9Y2G8
HOGENOMQ9Y2G8
Homologs : HomoloGeneDNAJC16
Homology/Alignments : Family Browser (UCSC)DNAJC16
Gene fusions - Rearrangements
Fusion : QuiverDNAJC16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC16
dbVarDNAJC16
ClinVarDNAJC16
1000_GenomesDNAJC16 
Exome Variant ServerDNAJC16
ExAC (Exome Aggregation Consortium)ENSG00000116138
GNOMAD BrowserENSG00000116138
Varsome BrowserDNAJC16
Genetic variants : HAPMAP23341
Genomic Variants (DGV)DNAJC16 [DGVbeta]
DECIPHERDNAJC16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJC16 
Mutations
ICGC Data PortalDNAJC16 
TCGA Data PortalDNAJC16 
Broad Tumor PortalDNAJC16
OASIS PortalDNAJC16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJC16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJC16
DgiDB (Drug Gene Interaction Database)DNAJC16
DoCM (Curated mutations)DNAJC16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC16 (select a term)
intoGenDNAJC16
Cancer3DDNAJC16(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDNAJC16
MedgenDNAJC16
Genetic Testing Registry DNAJC16
NextProtQ9Y2G8 [Medical]
TSGene23341
GENETestsDNAJC16
Target ValidationDNAJC16
Huge Navigator DNAJC16 [HugePedia]
snp3D : Map Gene to Disease23341
BioCentury BCIQDNAJC16
ClinGenDNAJC16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23341
Chemical/Pharm GKB GenePA142671964
Clinical trialDNAJC16
Miscellaneous
canSAR (ICR)DNAJC16 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC16
EVEXDNAJC16
GoPubMedDNAJC16
iHOPDNAJC16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:02:53 CET 2018

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