Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DNAJC17 (DnaJ heat shock protein family (Hsp40) member C17)

Identity

Alias_namesDnaJ (Hsp40) homolog
Alias_symbol (synonym)FLJ10634
Other alias-
HGNC (Hugo) DNAJC17
LocusID (NCBI) 55192
Atlas_Id 46818
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 40767869 and ends at 40807478 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNAJC17 (15q15.1) / CIB2 (15q25.1)DNAJC17 (15q15.1) / PPP1R14D (15q15.1)KIAA1217 (10p12.2) / DNAJC17 (15q15.1)
DNAJC17 15q15.1 / CIB2 15q25.1DNAJC17 15q15.1 / PPP1R14D 15q15.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC17   25556
Cards
Entrez_Gene (NCBI)DNAJC17  55192  DnaJ heat shock protein family (Hsp40) member C17
Aliases
GeneCards (Weizmann)DNAJC17
Ensembl hg19 (Hinxton)ENSG00000104129 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104129 [Gene_View]  chr15:40767869-40807478 [Contig_View]  DNAJC17 [Vega]
ICGC DataPortalENSG00000104129
TCGA cBioPortalDNAJC17
AceView (NCBI)DNAJC17
Genatlas (Paris)DNAJC17
WikiGenes55192
SOURCE (Princeton)DNAJC17
Genetics Home Reference (NIH)DNAJC17
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJC17  -     chr15:40767869-40807478 -  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJC17  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblDNAJC17 - 15q15.1 [CytoView hg19]  DNAJC17 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIDNAJC17 [Mapview hg19]  DNAJC17 [Mapview hg38]
OMIM616844   
Gene and transcription
Genbank (Entrez)AA834211 AK001496 AK308659 AK308858 AK309307
RefSeq transcript (Entrez)NM_018163
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJC17
Cluster EST : UnigeneHs.511069 [ NCBI ]
CGAP (NCI)Hs.511069
Alternative Splicing GalleryENSG00000104129
Gene ExpressionDNAJC17 [ NCBI-GEO ]   DNAJC17 [ EBI - ARRAY_EXPRESS ]   DNAJC17 [ SEEK ]   DNAJC17 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55192
GTEX Portal (Tissue expression)DNAJC17
Human Protein AtlasENSG00000104129-DNAJC17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVM6
Splice isoforms : SwissVarQ9NVM6
PhosPhoSitePlusQ9NVM6
Domaine pattern : Prosite (Expaxy)DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain    DNAJC17_RRM    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)DnaJ (PF00226)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00226    pfam00076   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJC17
DMDM Disease mutations55192
Blocks (Seattle)DNAJC17
PDB (SRS)2D9O   
PDB (PDBSum)2D9O   
PDB (IMB)2D9O   
PDB (RSDB)2D9O   
Structural Biology KnowledgeBase2D9O   
SCOP (Structural Classification of Proteins)2D9O   
CATH (Classification of proteins structures)2D9O   
SuperfamilyQ9NVM6
Human Protein Atlas [tissue]ENSG00000104129-DNAJC17 [tissue]
Peptide AtlasQ9NVM6
HPRD07111
IPIIPI00018798   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVM6
IntAct (EBI)Q9NVM6
FunCoupENSG00000104129
BioGRIDDNAJC17
STRING (EMBL)DNAJC17
ZODIACDNAJC17
Ontologies - Pathways
QuickGOQ9NVM6
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA binding  nucleus  cytoplasm  transcription, DNA-templated  toxin transport  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA binding  nucleus  cytoplasm  transcription, DNA-templated  toxin transport  
NDEx NetworkDNAJC17
Atlas of Cancer Signalling NetworkDNAJC17
Wikipedia pathwaysDNAJC17
Orthology - Evolution
OrthoDB55192
GeneTree (enSembl)ENSG00000104129
Phylogenetic Trees/Animal Genes : TreeFamDNAJC17
HOVERGENQ9NVM6
HOGENOMQ9NVM6
Homologs : HomoloGeneDNAJC17
Homology/Alignments : Family Browser (UCSC)DNAJC17
Gene fusions - Rearrangements
Fusion : MitelmanDNAJC17/CIB2 [15q15.1/15q25.1]  
Fusion : MitelmanDNAJC17/PPP1R14D [15q15.1/15q15.1]  [t(15;15)(q15;q15)]  
Fusion: TCGA_MDACCDNAJC17 15q15.1 CIB2 15q25.1 LUAD
Fusion: TCGA_MDACCDNAJC17 15q15.1 PPP1R14D 15q15.1 LUAD
Tumor Fusion PortalDNAJC17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC17
dbVarDNAJC17
ClinVarDNAJC17
1000_GenomesDNAJC17 
Exome Variant ServerDNAJC17
ExAC (Exome Aggregation Consortium)ENSG00000104129
GNOMAD BrowserENSG00000104129
Genetic variants : HAPMAP55192
Genomic Variants (DGV)DNAJC17 [DGVbeta]
DECIPHERDNAJC17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJC17 
Mutations
ICGC Data PortalDNAJC17 
TCGA Data PortalDNAJC17 
Broad Tumor PortalDNAJC17
OASIS PortalDNAJC17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJC17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJC17
DgiDB (Drug Gene Interaction Database)DNAJC17
DoCM (Curated mutations)DNAJC17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC17 (select a term)
intoGenDNAJC17
Cancer3DDNAJC17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616844   
Orphanet
DisGeNETDNAJC17
MedgenDNAJC17
Genetic Testing Registry DNAJC17
NextProtQ9NVM6 [Medical]
TSGene55192
GENETestsDNAJC17
Target ValidationDNAJC17
Huge Navigator DNAJC17 [HugePedia]
snp3D : Map Gene to Disease55192
BioCentury BCIQDNAJC17
ClinGenDNAJC17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55192
Chemical/Pharm GKB GenePA142671965
Clinical trialDNAJC17
Miscellaneous
canSAR (ICR)DNAJC17 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC17
EVEXDNAJC17
GoPubMedDNAJC17
iHOPDNAJC17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:10:53 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.