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DNAJC18 (DnaJ heat shock protein family (Hsp40) member C18)

Identity

Alias_namesDnaJ (Hsp40) homolog
Alias_symbol (synonym)MGC29463
Other alias-
HGNC (Hugo) DNAJC18
LocusID (NCBI) 202052
Atlas_Id 47502
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 139410203 and ends at 139439525 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCAT1 (12p12.1) / DNAJC18 (5q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC18   28429
Cards
Entrez_Gene (NCBI)DNAJC18  202052  DnaJ heat shock protein family (Hsp40) member C18
Aliases
GeneCards (Weizmann)DNAJC18
Ensembl hg19 (Hinxton)ENSG00000170464 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170464 [Gene_View]  chr5:139410203-139439525 [Contig_View]  DNAJC18 [Vega]
ICGC DataPortalENSG00000170464
TCGA cBioPortalDNAJC18
AceView (NCBI)DNAJC18
Genatlas (Paris)DNAJC18
WikiGenes202052
SOURCE (Princeton)DNAJC18
Genetics Home Reference (NIH)DNAJC18
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJC18  -     chr5:139410203-139439525 -  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJC18  -     5q31.2   [Description]    (hg19-Feb_2009)
EnsemblDNAJC18 - 5q31.2 [CytoView hg19]  DNAJC18 - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBIDNAJC18 [Mapview hg19]  DNAJC18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001329 AK308138 BC030162 BU735127 DA497858
RefSeq transcript (Entrez)NM_152686
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJC18
Cluster EST : UnigeneHs.483537 [ NCBI ]
CGAP (NCI)Hs.483537
Alternative Splicing GalleryENSG00000170464
Gene ExpressionDNAJC18 [ NCBI-GEO ]   DNAJC18 [ EBI - ARRAY_EXPRESS ]   DNAJC18 [ SEEK ]   DNAJC18 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202052
GTEX Portal (Tissue expression)DNAJC18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H819   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H819  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H819
Splice isoforms : SwissVarQ9H819
PhosPhoSitePlusQ9H819
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain    DnaJ_domain_CS    DUF1977_DnaJ-like   
Domain families : Pfam (Sanger)DnaJ (PF00226)    DUF1977 (PF09320)   
Domain families : Pfam (NCBI)pfam00226    pfam09320   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJC18
DMDM Disease mutations202052
Blocks (Seattle)DNAJC18
SuperfamilyQ9H819
Human Protein AtlasENSG00000170464
Peptide AtlasQ9H819
HPRD07130
IPIIPI00025510   IPI00963885   IPI00967672   IPI00967992   IPI00967471   IPI00965873   IPI00964162   IPI00964689   
Protein Interaction databases
DIP (DOE-UCLA)Q9H819
IntAct (EBI)Q9H819
FunCoupENSG00000170464
BioGRIDDNAJC18
STRING (EMBL)DNAJC18
ZODIACDNAJC18
Ontologies - Pathways
QuickGOQ9H819
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkDNAJC18
Atlas of Cancer Signalling NetworkDNAJC18
Wikipedia pathwaysDNAJC18
Orthology - Evolution
OrthoDB202052
GeneTree (enSembl)ENSG00000170464
Phylogenetic Trees/Animal Genes : TreeFamDNAJC18
HOVERGENQ9H819
HOGENOMQ9H819
Homologs : HomoloGeneDNAJC18
Homology/Alignments : Family Browser (UCSC)DNAJC18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC18
dbVarDNAJC18
ClinVarDNAJC18
1000_GenomesDNAJC18 
Exome Variant ServerDNAJC18
ExAC (Exome Aggregation Consortium)DNAJC18 (select the gene name)
Genetic variants : HAPMAP202052
Genomic Variants (DGV)DNAJC18 [DGVbeta]
DECIPHERDNAJC18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJC18 
Mutations
ICGC Data PortalDNAJC18 
TCGA Data PortalDNAJC18 
Broad Tumor PortalDNAJC18
OASIS PortalDNAJC18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJC18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJC18
DgiDB (Drug Gene Interaction Database)DNAJC18
DoCM (Curated mutations)DNAJC18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC18 (select a term)
intoGenDNAJC18
Cancer3DDNAJC18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDNAJC18
Genetic Testing Registry DNAJC18
NextProtQ9H819 [Medical]
TSGene202052
GENETestsDNAJC18
Target ValidationDNAJC18
Huge Navigator DNAJC18 [HugePedia]
snp3D : Map Gene to Disease202052
BioCentury BCIQDNAJC18
ClinGenDNAJC18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD202052
Chemical/Pharm GKB GenePA142671966
Clinical trialDNAJC18
Miscellaneous
canSAR (ICR)DNAJC18 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC18
EVEXDNAJC18
GoPubMedDNAJC18
iHOPDNAJC18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:05:43 CEST 2017

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