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DNAJC21 (DnaJ heat shock protein family (Hsp40) member C21)

Identity

Alias_namesDnaJ (Hsp40) homolog, subfamily C, member 21
Alias_symbol (synonym)GS3
DNAJA5
JJJ1
Other aliasBMFS3
HGNC (Hugo) DNAJC21
LocusID (NCBI) 134218
Atlas_Id 62563
Location 5p13.2  [Link to chromosome band 5p13]
Location_base_pair Starts at 34929593 and ends at 34958964 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DNAJC21 (5p13.2) / AKNAD1 (1p13.3)DNAJC21 (5p13.2) / RAI14 (5p13.2)DNAJC21 (5p13.2) / TMED9 (5q35.3)
DNAJC21 (5p13.2) / TMEM106B (7p21.3)HSP90AB1 (6p21.1) / DNAJC21 (5p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC21   27030
Cards
Entrez_Gene (NCBI)DNAJC21  134218  DnaJ heat shock protein family (Hsp40) member C21
AliasesBMFS3; DNAJA5; GS3; JJJ1
GeneCards (Weizmann)DNAJC21
Ensembl hg19 (Hinxton)ENSG00000168724 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168724 [Gene_View]  chr5:34929593-34958964 [Contig_View]  DNAJC21 [Vega]
ICGC DataPortalENSG00000168724
TCGA cBioPortalDNAJC21
AceView (NCBI)DNAJC21
Genatlas (Paris)DNAJC21
WikiGenes134218
SOURCE (Princeton)DNAJC21
Genetics Home Reference (NIH)DNAJC21
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJC21  -     chr5:34929593-34958964 +  5p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJC21  -     5p13.2   [Description]    (hg19-Feb_2009)
EnsemblDNAJC21 - 5p13.2 [CytoView hg19]  DNAJC21 - 5p13.2 [CytoView hg38]
Mapping of homologs : NCBIDNAJC21 [Mapview hg19]  DNAJC21 [Mapview hg38]
OMIM617048   617052   
Gene and transcription
Genbank (Entrez)AK022694 AK054651 AK127749 AY177688 AY258422
RefSeq transcript (Entrez)NM_001012339 NM_001348420 NM_194283
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJC21
Cluster EST : UnigeneHs.131887 [ NCBI ]
CGAP (NCI)Hs.131887
Alternative Splicing GalleryENSG00000168724
Gene ExpressionDNAJC21 [ NCBI-GEO ]   DNAJC21 [ EBI - ARRAY_EXPRESS ]   DNAJC21 [ SEEK ]   DNAJC21 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134218
GTEX Portal (Tissue expression)DNAJC21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5F1R6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5F1R6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5F1R6
Splice isoforms : SwissVarQ5F1R6
PhosPhoSitePlusQ5F1R6
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)DnaJ_domain    DnaJ_domain_CS    Znf_C2H2    Znf_C2H2-like    Znf_C2H2_jaz    Znf_U1   
Domain families : Pfam (Sanger)DnaJ (PF00226)    zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam00226    pfam12171   
Domain families : Smart (EMBL)DnaJ (SM00271)  ZnF_C2H2 (SM00355)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)DNAJC21
DMDM Disease mutations134218
Blocks (Seattle)DNAJC21
SuperfamilyQ5F1R6
Human Protein AtlasENSG00000168724
Peptide AtlasQ5F1R6
HPRD14056
IPIIPI00142716   IPI00413366   IPI00829610   
Protein Interaction databases
DIP (DOE-UCLA)Q5F1R6
IntAct (EBI)Q5F1R6
FunCoupENSG00000168724
BioGRIDDNAJC21
STRING (EMBL)DNAJC21
ZODIACDNAJC21
Ontologies - Pathways
QuickGOQ5F1R6
Ontology : AmiGORNA binding  protein binding  nucleolus  ribosome  protein folding  zinc ion binding  
Ontology : EGO-EBIRNA binding  protein binding  nucleolus  ribosome  protein folding  zinc ion binding  
NDEx NetworkDNAJC21
Atlas of Cancer Signalling NetworkDNAJC21
Wikipedia pathwaysDNAJC21
Orthology - Evolution
OrthoDB134218
GeneTree (enSembl)ENSG00000168724
Phylogenetic Trees/Animal Genes : TreeFamDNAJC21
HOVERGENQ5F1R6
HOGENOMQ5F1R6
Homologs : HomoloGeneDNAJC21
Homology/Alignments : Family Browser (UCSC)DNAJC21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC21
dbVarDNAJC21
ClinVarDNAJC21
1000_GenomesDNAJC21 
Exome Variant ServerDNAJC21
ExAC (Exome Aggregation Consortium)DNAJC21 (select the gene name)
Genetic variants : HAPMAP134218
Genomic Variants (DGV)DNAJC21 [DGVbeta]
DECIPHERDNAJC21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJC21 
Mutations
ICGC Data PortalDNAJC21 
TCGA Data PortalDNAJC21 
Broad Tumor PortalDNAJC21
OASIS PortalDNAJC21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJC21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJC21
DgiDB (Drug Gene Interaction Database)DNAJC21
DoCM (Curated mutations)DNAJC21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC21 (select a term)
intoGenDNAJC21
Cancer3DDNAJC21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617048    617052   
Orphanet
MedgenDNAJC21
Genetic Testing Registry DNAJC21
NextProtQ5F1R6 [Medical]
TSGene134218
GENETestsDNAJC21
Target ValidationDNAJC21
Huge Navigator DNAJC21 [HugePedia]
snp3D : Map Gene to Disease134218
BioCentury BCIQDNAJC21
ClinGenDNAJC21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134218
Chemical/Pharm GKB GenePA162383874
Clinical trialDNAJC21
Miscellaneous
canSAR (ICR)DNAJC21 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC21
EVEXDNAJC21
GoPubMedDNAJC21
iHOPDNAJC21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:46:12 CEST 2017

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