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DNAJC27 (DnaJ heat shock protein family (Hsp40) member C27)

Identity

Alias_namesRBJ
rab and DnaJ domain containing
DnaJ (Hsp40) homolog, subfamily C, member 27
Alias_symbol (synonym)RabJS
Other alias
HGNC (Hugo) DNAJC27
LocusID (NCBI) 51277
Atlas_Id 43463
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 24943636 and ends at 24972094 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HADHA (2p23.3) / DNAJC27 (2p23.3)HADHA 2p23.3 / DNAJC27 2p23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC27   30290
Cards
Entrez_Gene (NCBI)DNAJC27  51277  DnaJ heat shock protein family (Hsp40) member C27
AliasesRBJ; RabJS
GeneCards (Weizmann)DNAJC27
Ensembl hg19 (Hinxton)ENSG00000115137 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115137 [Gene_View]  chr2:24943636-24972094 [Contig_View]  DNAJC27 [Vega]
ICGC DataPortalENSG00000115137
TCGA cBioPortalDNAJC27
AceView (NCBI)DNAJC27
Genatlas (Paris)DNAJC27
WikiGenes51277
SOURCE (Princeton)DNAJC27
Genetics Home Reference (NIH)DNAJC27
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJC27  -     chr2:24943636-24972094 -  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJC27  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblDNAJC27 - 2p23.3 [CytoView hg19]  DNAJC27 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIDNAJC27 [Mapview hg19]  DNAJC27 [Mapview hg38]
OMIM613527   
Gene and transcription
Genbank (Entrez)AF178983 AK294726 AL117490 AL137731 AY094594
RefSeq transcript (Entrez)NM_001198559 NM_016544
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJC27
Cluster EST : UnigeneHs.434993 [ NCBI ]
CGAP (NCI)Hs.434993
Alternative Splicing GalleryENSG00000115137
Gene ExpressionDNAJC27 [ NCBI-GEO ]   DNAJC27 [ EBI - ARRAY_EXPRESS ]   DNAJC27 [ SEEK ]   DNAJC27 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51277
GTEX Portal (Tissue expression)DNAJC27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZQ0
Splice isoforms : SwissVarQ9NZQ0
PhosPhoSitePlusQ9NZQ0
Domaine pattern : Prosite (Expaxy)DNAJ_2 (PS50076)    RAB (PS51419)   
Domains : Interpro (EBI)DnaJ_domain    P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)DnaJ (PF00226)    Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00226    pfam00071   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJC27
DMDM Disease mutations51277
Blocks (Seattle)DNAJC27
PDB (SRS)2YS8   
PDB (PDBSum)2YS8   
PDB (IMB)2YS8   
PDB (RSDB)2YS8   
Structural Biology KnowledgeBase2YS8   
SCOP (Structural Classification of Proteins)2YS8   
CATH (Classification of proteins structures)2YS8   
SuperfamilyQ9NZQ0
Human Protein AtlasENSG00000115137
Peptide AtlasQ9NZQ0
HPRD15221
IPIIPI00022501   IPI00552329   IPI00892589   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZQ0
IntAct (EBI)Q9NZQ0
FunCoupENSG00000115137
BioGRIDDNAJC27
STRING (EMBL)DNAJC27
ZODIACDNAJC27
Ontologies - Pathways
QuickGOQ9NZQ0
Ontology : AmiGOGTPase activity  protein binding  GTP binding  nucleus  mitochondrion  positive regulation of ERK1 and ERK2 cascade  regulation of MAPK export from nucleus  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  nucleus  mitochondrion  positive regulation of ERK1 and ERK2 cascade  regulation of MAPK export from nucleus  
NDEx NetworkDNAJC27
Atlas of Cancer Signalling NetworkDNAJC27
Wikipedia pathwaysDNAJC27
Orthology - Evolution
OrthoDB51277
GeneTree (enSembl)ENSG00000115137
Phylogenetic Trees/Animal Genes : TreeFamDNAJC27
HOVERGENQ9NZQ0
HOGENOMQ9NZQ0
Homologs : HomoloGeneDNAJC27
Homology/Alignments : Family Browser (UCSC)DNAJC27
Gene fusions - Rearrangements
Fusion : MitelmanHADHA/DNAJC27 [2p23.3/2p23.3]  [t(2;2)(p23;p23)]  
Fusion: TCGAHADHA 2p23.3 DNAJC27 2p23.3 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC27
dbVarDNAJC27
ClinVarDNAJC27
1000_GenomesDNAJC27 
Exome Variant ServerDNAJC27
ExAC (Exome Aggregation Consortium)DNAJC27 (select the gene name)
Genetic variants : HAPMAP51277
Genomic Variants (DGV)DNAJC27 [DGVbeta]
DECIPHERDNAJC27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJC27 
Mutations
ICGC Data PortalDNAJC27 
TCGA Data PortalDNAJC27 
Broad Tumor PortalDNAJC27
OASIS PortalDNAJC27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJC27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJC27
DgiDB (Drug Gene Interaction Database)DNAJC27
DoCM (Curated mutations)DNAJC27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC27 (select a term)
intoGenDNAJC27
Cancer3DDNAJC27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613527   
Orphanet
MedgenDNAJC27
Genetic Testing Registry DNAJC27
NextProtQ9NZQ0 [Medical]
TSGene51277
GENETestsDNAJC27
Target ValidationDNAJC27
Huge Navigator DNAJC27 [HugePedia]
snp3D : Map Gene to Disease51277
BioCentury BCIQDNAJC27
ClinGenDNAJC27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51277
Chemical/Pharm GKB GenePA164718860
Clinical trialDNAJC27
Miscellaneous
canSAR (ICR)DNAJC27 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC27
EVEXDNAJC27
GoPubMedDNAJC27
iHOPDNAJC27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:51:51 CEST 2017

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