Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DNAJC5 (DnaJ (Hsp40) homolog, subfamily C, member 5)

Identity

Other namesCLN4
CLN4B
CSP
DNAJC5A
NCL
HGNC (Hugo) DNAJC5
LocusID (NCBI) 80331
Location 20q13.33
Location_base_pair Starts at 62526455 and ends at 62567384 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DNAJC5   16235
Cards
Entrez_Gene (NCBI)DNAJC5  80331  DnaJ (Hsp40) homolog, subfamily C, member 5
GeneCards (Weizmann)DNAJC5
Ensembl hg19 (Hinxton)ENSG00000101152 [Gene_View]  chr20:62526455-62567384 [Contig_View]  DNAJC5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101152 [Gene_View]  chr20:62526455-62567384 [Contig_View]  DNAJC5 [Vega]
ICGC DataPortalENSG00000101152
cBioPortalDNAJC5
AceView (NCBI)DNAJC5
Genatlas (Paris)DNAJC5
WikiGenes80331
SOURCE (Princeton)DNAJC5
Genomic and cartography
GoldenPath hg19 (UCSC)DNAJC5  -     chr20:62526455-62567384 +  20q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DNAJC5  -     20q13.33   [Description]    (hg38-Dec_2013)
EnsemblDNAJC5 - 20q13.33 [CytoView hg19]  DNAJC5 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIDNAJC5 [Mapview hg19]  DNAJC5 [Mapview hg38]
OMIM611203   
Gene and transcription
Genbank (Entrez)AK023132 AK024508 AK074041 AK128776 AK289585
RefSeq transcript (Entrez)NM_025219
RefSeq genomic (Entrez)AC_000152 NC_000020 NC_018931 NG_029805 NT_011362 NW_001838671 NW_004929419
Consensus coding sequences : CCDS (NCBI)DNAJC5
Cluster EST : UnigeneHs.164419 [ NCBI ]
CGAP (NCI)Hs.164419
Alternative Splicing : Fast-db (Paris)GSHG0018926
Alternative Splicing GalleryENSG00000101152
Gene ExpressionDNAJC5 [ NCBI-GEO ]     DNAJC5 [ SEEK ]   DNAJC5 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3Z4 (Uniprot)
NextProtQ9H3Z4  [Medical]
With graphics : InterProQ9H3Z4
Splice isoforms : SwissVarQ9H3Z4 (Swissvar)
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain    DnaJ_domain_CS   
Related proteins : CluSTrQ9H3Z4
Domain families : Pfam (Sanger)DnaJ (PF00226)   
Domain families : Pfam (NCBI)pfam00226   
Domain families : Smart (EMBL)DnaJ (SM00271)  
DMDM Disease mutations80331
Blocks (Seattle)Q9H3Z4
Human Protein AtlasENSG00000101152
Peptide AtlasQ9H3Z4
HPRD08539
IPIIPI00402231   IPI00023780   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3Z4
IntAct (EBI)Q9H3Z4
FunCoupENSG00000101152
BioGRIDDNAJC5
IntegromeDBDNAJC5
STRING (EMBL)DNAJC5
Ontologies - Pathways
QuickGOQ9H3Z4
Ontology : AmiGOglycoprotein binding  mitochondrion  lysosomal membrane  plasma membrane  plasma membrane  synaptic transmission  neurotransmitter secretion  synaptic vesicle  cell death  membrane  melanosome  ATP-dependent protein binding  negative regulation of neuron apoptotic process  clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane  extracellular vesicular exosome  
Ontology : EGO-EBIglycoprotein binding  mitochondrion  lysosomal membrane  plasma membrane  plasma membrane  synaptic transmission  neurotransmitter secretion  synaptic vesicle  cell death  membrane  melanosome  ATP-dependent protein binding  negative regulation of neuron apoptotic process  clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane  extracellular vesicular exosome  
Pathways : KEGGProtein processing in endoplasmic reticulum   
Protein Interaction DatabaseDNAJC5
DoCM (Curated mutations)DNAJC5
Wikipedia pathwaysDNAJC5
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerDNAJC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC5
dbVarDNAJC5
ClinVarDNAJC5
1000_GenomesDNAJC5 
Exome Variant ServerDNAJC5
SNP (GeneSNP Utah)DNAJC5
SNP : HGBaseDNAJC5
Genetic variants : HAPMAPDNAJC5
Genomic VariantsDNAJC5  DNAJC5 [DGVbeta]
Mutations
ICGC Data PortalENSG00000101152 
Somatic Mutations in Cancer : COSMICDNAJC5 
CONAN: Copy Number AnalysisDNAJC5 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)20:62526455-62567384
Mutations and Diseases : HGMDDNAJC5
OMIM611203   
MedgenDNAJC5
NextProtQ9H3Z4 [Medical]
GENETestsDNAJC5
Disease Genetic AssociationDNAJC5
Huge Navigator DNAJC5 [HugePedia]  DNAJC5 [HugeCancerGEM]
snp3D : Map Gene to Disease80331
DGIdb (Drug Gene Interaction db)DNAJC5
General knowledge
Homologs : HomoloGeneDNAJC5
Homology/Alignments : Family Browser (UCSC)DNAJC5
Phylogenetic Trees/Animal Genes : TreeFamDNAJC5
Chemical/Protein Interactions : CTD80331
Chemical/Pharm GKB GenePA27422
Clinical trialDNAJC5
Cancer Resource (Charite)ENSG00000101152
Other databases
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
CoreMineDNAJC5
GoPubMedDNAJC5
iHOPDNAJC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 21:14:36 CET 2014

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