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DNAJC5 (DnaJ (Hsp40) homolog, subfamily C, member 5)

Identity

Other namesCLN4
CLN4B
CSP
DNAJC5A
NCL
HGNC (Hugo) DNAJC5
LocusID (NCBI) 80331
Location 20q13.33
Location_base_pair Starts at 62526455 and ends at 62567384 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DNAJC5   16235
Cards
Entrez_Gene (NCBI)DNAJC5  80331  DnaJ (Hsp40) homolog, subfamily C, member 5
GeneCards (Weizmann)DNAJC5
Ensembl (Hinxton)ENSG00000101152 [Gene_View]  chr20:62526455-62567384 [Contig_View]  DNAJC5 [Vega]
ICGC DataPortalENSG00000101152
cBioPortalDNAJC5
AceView (NCBI)DNAJC5
Genatlas (Paris)DNAJC5
WikiGenes80331
SOURCE (Princeton)NM_025219
Genomic and cartography
GoldenPath (UCSC)DNAJC5  -  20q13.33   chr20:62526455-62567384 +  20q13.33   [Description]    (hg19-Feb_2009)
EnsemblDNAJC5 - 20q13.33 [CytoView]
Mapping of homologs : NCBIDNAJC5 [Mapview]
OMIM611203   
Gene and transcription
Genbank (Entrez)AK023132 AK024508 AK074041 AK128776 AK289585
RefSeq transcript (Entrez)NM_025219
RefSeq genomic (Entrez)AC_000152 NC_000020 NC_018931 NG_029805 NT_011362 NW_001838671 NW_004929419
Consensus coding sequences : CCDS (NCBI)DNAJC5
Cluster EST : UnigeneHs.164419 [ NCBI ]
CGAP (NCI)Hs.164419
Alternative Splicing : Fast-db (Paris)GSHG0018926
Alternative Splicing GalleryENSG00000101152
Gene ExpressionDNAJC5 [ NCBI-GEO ]     DNAJC5 [ SEEK ]   DNAJC5 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3Z4 (Uniprot)
NextProtQ9H3Z4  [Medical]
With graphics : InterProQ9H3Z4
Splice isoforms : SwissVarQ9H3Z4 (Swissvar)
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain [organisation]   DnaJ_domain_CS [organisation]  
Related proteins : CluSTrQ9H3Z4
Domain families : Pfam (Sanger)DnaJ (PF00226)   
Domain families : Pfam (NCBI)pfam00226   
Domain families : Smart (EMBL)DnaJ (SM00271)  
DMDM Disease mutations80331
Blocks (Seattle)Q9H3Z4
Human Protein AtlasENSG00000101152 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9H3Z4
HPRD08539
IPIIPI00402231   IPI00023780   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3Z4
IntAct (EBI)Q9H3Z4
FunCoupENSG00000101152
BioGRIDDNAJC5
InParanoidQ9H3Z4
Interologous Interaction database Q9H3Z4
IntegromeDBDNAJC5
STRING (EMBL)DNAJC5
Ontologies - Pathways
Ontology : AmiGOglycoprotein binding  mitochondrion  lysosomal membrane  plasma membrane  plasma membrane  synaptic transmission  neurotransmitter secretion  synaptic vesicle  cell death  membrane  melanosome  ATP-dependent protein binding  negative regulation of neuron apoptotic process  clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane  extracellular vesicular exosome  
Ontology : EGO-EBIglycoprotein binding  mitochondrion  lysosomal membrane  plasma membrane  plasma membrane  synaptic transmission  neurotransmitter secretion  synaptic vesicle  cell death  membrane  melanosome  ATP-dependent protein binding  negative regulation of neuron apoptotic process  clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane  extracellular vesicular exosome  
Pathways : KEGGProtein processing in endoplasmic reticulum   
Protein Interaction DatabaseDNAJC5
Wikipedia pathwaysDNAJC5
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)DNAJC5
snp3D : Map Gene to Disease80331
SNP (GeneSNP Utah)DNAJC5
SNP : HGBaseDNAJC5
Genetic variants : HAPMAPDNAJC5
Exome VariantDNAJC5
1000_GenomesDNAJC5 
ICGC programENSG00000101152 
Somatic Mutations in Cancer : COSMICDNAJC5 
CONAN: Copy Number AnalysisDNAJC5 
Mutations and Diseases : HGMDDNAJC5
Mutations and Diseases : intOGenDNAJC5
Genomic VariantsDNAJC5  DNAJC5 [DGVbeta]
dbVarDNAJC5
ClinVarDNAJC5
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM611203   
MedgenDNAJC5
GENETestsDNAJC5
Disease Genetic AssociationDNAJC5
Huge Navigator DNAJC5 [HugePedia]  DNAJC5 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneDNAJC5
Homology/Alignments : Family Browser (UCSC)DNAJC5
Phylogenetic Trees/Animal Genes : TreeFamDNAJC5
Chemical/Protein Interactions : CTD80331
Chemical/Pharm GKB GenePA27422
Clinical trialDNAJC5
Cancer Resource (Charite)ENSG00000101152
Other databases
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
CoreMineDNAJC5
iHOPDNAJC5
OncoSearchDNAJC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:48:17 CEST 2014

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