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DNAJC5B (DnaJ heat shock protein family (Hsp40) member C5 beta)

Identity

Alias_namesDnaJ (Hsp40) homolog
Alias_symbol (synonym)MGC26226
CSP-beta
Other alias
HGNC (Hugo) DNAJC5B
LocusID (NCBI) 85479
Atlas_Id 46793
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 66014978 and ends at 66101243 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PDE9A (21q22.3) / DNAJC5B (8q13.1)SGK3 (8q13.1) / DNAJC5B (8q13.1)TSC22D1 (13q14.11) / DNAJC5B (8q13.1)
SGK3 8q13.1 / DNAJC5B 8q13.1TSC22D1 13q14.11 / DNAJC5B 8q13.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC5B   24138
Cards
Entrez_Gene (NCBI)DNAJC5B  85479  DnaJ heat shock protein family (Hsp40) member C5 beta
AliasesCSP-beta
GeneCards (Weizmann)DNAJC5B
Ensembl hg19 (Hinxton)ENSG00000147570 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147570 [Gene_View]  chr8:66014978-66101243 [Contig_View]  DNAJC5B [Vega]
ICGC DataPortalENSG00000147570
TCGA cBioPortalDNAJC5B
AceView (NCBI)DNAJC5B
Genatlas (Paris)DNAJC5B
WikiGenes85479
SOURCE (Princeton)DNAJC5B
Genetics Home Reference (NIH)DNAJC5B
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJC5B  -     chr8:66014978-66101243 +  8q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJC5B  -     8q13.1   [Description]    (hg19-Feb_2009)
EnsemblDNAJC5B - 8q13.1 [CytoView hg19]  DNAJC5B - 8q13.1 [CytoView hg38]
Mapping of homologs : NCBIDNAJC5B [Mapview hg19]  DNAJC5B [Mapview hg38]
OMIM613945   
Gene and transcription
Genbank (Entrez)AF368276 AL133660 BC016742 BG701336 BU627018
RefSeq transcript (Entrez)NM_001349432 NM_033105
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJC5B
Cluster EST : UnigeneHs.491885 [ NCBI ]
CGAP (NCI)Hs.491885
Alternative Splicing GalleryENSG00000147570
Gene ExpressionDNAJC5B [ NCBI-GEO ]   DNAJC5B [ EBI - ARRAY_EXPRESS ]   DNAJC5B [ SEEK ]   DNAJC5B [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC5B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85479
GTEX Portal (Tissue expression)DNAJC5B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UF47   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UF47  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UF47
Splice isoforms : SwissVarQ9UF47
PhosPhoSitePlusQ9UF47
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain    DnaJ_domain_CS   
Domain families : Pfam (Sanger)DnaJ (PF00226)   
Domain families : Pfam (NCBI)pfam00226   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJC5B
DMDM Disease mutations85479
Blocks (Seattle)DNAJC5B
SuperfamilyQ9UF47
Human Protein AtlasENSG00000147570
Peptide AtlasQ9UF47
HPRD07474
IPIIPI00647830   IPI00976210   
Protein Interaction databases
DIP (DOE-UCLA)Q9UF47
IntAct (EBI)Q9UF47
FunCoupENSG00000147570
BioGRIDDNAJC5B
STRING (EMBL)DNAJC5B
ZODIACDNAJC5B
Ontologies - Pathways
QuickGOQ9UF47
Ontology : AmiGOprotein binding  membrane  
Ontology : EGO-EBIprotein binding  membrane  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkDNAJC5B
Atlas of Cancer Signalling NetworkDNAJC5B
Wikipedia pathwaysDNAJC5B
Orthology - Evolution
OrthoDB85479
GeneTree (enSembl)ENSG00000147570
Phylogenetic Trees/Animal Genes : TreeFamDNAJC5B
HOVERGENQ9UF47
HOGENOMQ9UF47
Homologs : HomoloGeneDNAJC5B
Homology/Alignments : Family Browser (UCSC)DNAJC5B
Gene fusions - Rearrangements
Fusion : MitelmanSGK3/DNAJC5B [8q13.1/8q13.1]  [t(8;8)(q13;q13)]  
Fusion : MitelmanTSC22D1/DNAJC5B [13q14.11/8q13.1]  [t(8;13)(q13;q14)]  
Fusion: TCGASGK3 8q13.1 DNAJC5B 8q13.1 OV
Fusion: TCGATSC22D1 13q14.11 DNAJC5B 8q13.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC5B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC5B
dbVarDNAJC5B
ClinVarDNAJC5B
1000_GenomesDNAJC5B 
Exome Variant ServerDNAJC5B
ExAC (Exome Aggregation Consortium)DNAJC5B (select the gene name)
Genetic variants : HAPMAP85479
Genomic Variants (DGV)DNAJC5B [DGVbeta]
DECIPHERDNAJC5B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJC5B 
Mutations
ICGC Data PortalDNAJC5B 
TCGA Data PortalDNAJC5B 
Broad Tumor PortalDNAJC5B
OASIS PortalDNAJC5B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC5B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJC5B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJC5B
DgiDB (Drug Gene Interaction Database)DNAJC5B
DoCM (Curated mutations)DNAJC5B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC5B (select a term)
intoGenDNAJC5B
Cancer3DDNAJC5B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613945   
Orphanet
MedgenDNAJC5B
Genetic Testing Registry DNAJC5B
NextProtQ9UF47 [Medical]
TSGene85479
GENETestsDNAJC5B
Target ValidationDNAJC5B
Huge Navigator DNAJC5B [HugePedia]
snp3D : Map Gene to Disease85479
BioCentury BCIQDNAJC5B
ClinGenDNAJC5B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85479
Chemical/Pharm GKB GenePA134962894
Clinical trialDNAJC5B
Miscellaneous
canSAR (ICR)DNAJC5B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC5B
EVEXDNAJC5B
GoPubMedDNAJC5B
iHOPDNAJC5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:31:30 CEST 2017

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