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DNAJC7 (DnaJ heat shock protein family (Hsp40) member C7)

Identity

Alias_namesTTC2
DnaJ (Hsp40) homolog
Alias_symbol (synonym)TPR2
Other aliasDJ11
DJC7
HGNC (Hugo) DNAJC7
LocusID (NCBI) 7266
Atlas_Id 47420
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41976421 and ends at 42017165 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACLY (17q21.2) / DNAJC7 (17q21.2)DNAJC7 (17q21.2) / ARID4B (1q42.3)DNAJC7 (17q21.2) / BBS5 (2q31.1)
FYTTD1 (3q29) / DNAJC7 (17q21.2)SNX29 (16p13.13) / DNAJC7 (17q21.2)ACLY 17q21.2 / DNAJC7 17q21.2
FYTTD1 3q29 / DNAJC7 17q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC7   12392
Cards
Entrez_Gene (NCBI)DNAJC7  7266  DnaJ heat shock protein family (Hsp40) member C7
AliasesDJ11; DJC7; TPR2; TTC2
GeneCards (Weizmann)DNAJC7
Ensembl hg19 (Hinxton)ENSG00000168259 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168259 [Gene_View]  chr17:41976421-42017165 [Contig_View]  DNAJC7 [Vega]
ICGC DataPortalENSG00000168259
TCGA cBioPortalDNAJC7
AceView (NCBI)DNAJC7
Genatlas (Paris)DNAJC7
WikiGenes7266
SOURCE (Princeton)DNAJC7
Genetics Home Reference (NIH)DNAJC7
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJC7  -     chr17:41976421-42017165 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJC7  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblDNAJC7 - 17q21.2 [CytoView hg19]  DNAJC7 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIDNAJC7 [Mapview hg19]  DNAJC7 [Mapview hg38]
OMIM601964   
Gene and transcription
Genbank (Entrez)AB209834 AK025003 AK291047 AK296602 AK298860
RefSeq transcript (Entrez)NM_001144766 NM_003315
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJC7
Cluster EST : UnigeneHs.744481 [ NCBI ]
CGAP (NCI)Hs.744481
Alternative Splicing GalleryENSG00000168259
Gene ExpressionDNAJC7 [ NCBI-GEO ]   DNAJC7 [ EBI - ARRAY_EXPRESS ]   DNAJC7 [ SEEK ]   DNAJC7 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7266
GTEX Portal (Tissue expression)DNAJC7
Human Protein AtlasENSG00000168259-DNAJC7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99615   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99615  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99615
Splice isoforms : SwissVarQ99615
PhosPhoSitePlusQ99615
Domaine pattern : Prosite (Expaxy)DNAJ_2 (PS50076)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)DnaJ_domain    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)DnaJ (PF00226)    TPR_11 (PF13414)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam00226    pfam13414    pfam13181   
Domain families : Smart (EMBL)DnaJ (SM00271)  TPR (SM00028)  
Conserved Domain (NCBI)DNAJC7
DMDM Disease mutations7266
Blocks (Seattle)DNAJC7
SuperfamilyQ99615
Human Protein Atlas [tissue]ENSG00000168259-DNAJC7 [tissue]
Peptide AtlasQ99615
IPIIPI00329629   IPI00794610   
Protein Interaction databases
DIP (DOE-UCLA)Q99615
IntAct (EBI)Q99615
FunCoupENSG00000168259
BioGRIDDNAJC7
STRING (EMBL)DNAJC7
ZODIACDNAJC7
Ontologies - Pathways
QuickGOQ99615
Ontology : AmiGOATPase activator activity  protein binding  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  cytoskeleton  protein folding  membrane  heat shock protein binding  positive regulation of ATPase activity  extracellular exosome  chaperone cofactor-dependent protein refolding  regulation of cellular response to heat  
Ontology : EGO-EBIATPase activator activity  protein binding  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  cytoskeleton  protein folding  membrane  heat shock protein binding  positive regulation of ATPase activity  extracellular exosome  chaperone cofactor-dependent protein refolding  regulation of cellular response to heat  
NDEx NetworkDNAJC7
Atlas of Cancer Signalling NetworkDNAJC7
Wikipedia pathwaysDNAJC7
Orthology - Evolution
OrthoDB7266
GeneTree (enSembl)ENSG00000168259
Phylogenetic Trees/Animal Genes : TreeFamDNAJC7
HOVERGENQ99615
HOGENOMQ99615
Homologs : HomoloGeneDNAJC7
Homology/Alignments : Family Browser (UCSC)DNAJC7
Gene fusions - Rearrangements
Fusion : MitelmanACLY/DNAJC7 [17q21.2/17q21.2]  [t(17;17)(q21;q21)]  
Fusion : MitelmanFYTTD1/DNAJC7 [3q29/17q21.2]  [t(3;17)(q29;q21)]  
Fusion: TCGA_MDACCACLY 17q21.2 DNAJC7 17q21.2 BRCA
Fusion: TCGA_MDACCFYTTD1 3q29 DNAJC7 17q21.2 LUAD
Tumor Fusion PortalDNAJC7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC7
dbVarDNAJC7
ClinVarDNAJC7
1000_GenomesDNAJC7 
Exome Variant ServerDNAJC7
ExAC (Exome Aggregation Consortium)ENSG00000168259
GNOMAD BrowserENSG00000168259
Genetic variants : HAPMAP7266
Genomic Variants (DGV)DNAJC7 [DGVbeta]
DECIPHERDNAJC7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJC7 
Mutations
ICGC Data PortalDNAJC7 
TCGA Data PortalDNAJC7 
Broad Tumor PortalDNAJC7
OASIS PortalDNAJC7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJC7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJC7
DgiDB (Drug Gene Interaction Database)DNAJC7
DoCM (Curated mutations)DNAJC7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC7 (select a term)
intoGenDNAJC7
Cancer3DDNAJC7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601964   
Orphanet
DisGeNETDNAJC7
MedgenDNAJC7
Genetic Testing Registry DNAJC7
NextProtQ99615 [Medical]
TSGene7266
GENETestsDNAJC7
Target ValidationDNAJC7
Huge Navigator DNAJC7 [HugePedia]
snp3D : Map Gene to Disease7266
BioCentury BCIQDNAJC7
ClinGenDNAJC7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7266
Chemical/Pharm GKB GenePA27424
Clinical trialDNAJC7
Miscellaneous
canSAR (ICR)DNAJC7 (select the gene name)
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC7
EVEXDNAJC7
GoPubMedDNAJC7
iHOPDNAJC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:10:56 CET 2017

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