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DNAJC8 (DnaJ (Hsp40) homolog, subfamily C, member 8)

Identity

Alias_namesDnaJ (Hsp40) homolog, subfamily C, member 8
Alias_symbol (synonym)SPF31
Other aliasHSPC331
HGNC (Hugo) DNAJC8
LocusID (NCBI) 22826
Atlas_Id 62570
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 28526790 and ends at 28559542 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DNAJC8 (1p35.3) / ERBB2 (17q12)DNAJC8 (1p35.3) / KDF1 (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC8   15470
Cards
Entrez_Gene (NCBI)DNAJC8  22826  DnaJ (Hsp40) homolog, subfamily C, member 8
AliasesHSPC331; SPF31
GeneCards (Weizmann)DNAJC8
Ensembl hg19 (Hinxton)ENSG00000126698 [Gene_View]  chr1:28526790-28559542 [Contig_View]  DNAJC8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000126698 [Gene_View]  chr1:28526790-28559542 [Contig_View]  DNAJC8 [Vega]
ICGC DataPortalENSG00000126698
TCGA cBioPortalDNAJC8
AceView (NCBI)DNAJC8
Genatlas (Paris)DNAJC8
WikiGenes22826
SOURCE (Princeton)DNAJC8
Genetics Home Reference (NIH)DNAJC8
Genomic and cartography
GoldenPath hg19 (UCSC)DNAJC8  -     chr1:28526790-28559542 -  1p35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DNAJC8  -     1p35.3   [Description]    (hg38-Dec_2013)
EnsemblDNAJC8 - 1p35.3 [CytoView hg19]  DNAJC8 - 1p35.3 [CytoView hg38]
Mapping of homologs : NCBIDNAJC8 [Mapview hg19]  DNAJC8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF083190 AF161433 AF161449 AK300797 BC033159
RefSeq transcript (Entrez)NM_014280
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)DNAJC8
Cluster EST : UnigeneHs.433540 [ NCBI ]
CGAP (NCI)Hs.433540
Alternative Splicing GalleryENSG00000126698
Gene ExpressionDNAJC8 [ NCBI-GEO ]   DNAJC8 [ EBI - ARRAY_EXPRESS ]   DNAJC8 [ SEEK ]   DNAJC8 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22826
GTEX Portal (Tissue expression)DNAJC8
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75937   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75937  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75937
Splice isoforms : SwissVarO75937
PhosPhoSitePlusO75937
Domaine pattern : Prosite (Expaxy)DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain   
Domain families : Pfam (Sanger)DnaJ (PF00226)   
Domain families : Pfam (NCBI)pfam00226   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJC8
DMDM Disease mutations22826
Blocks (Seattle)DNAJC8
SuperfamilyO75937
Human Protein AtlasENSG00000126698
Peptide AtlasO75937
HPRD13236
IPIIPI00003438   IPI00383345   
Protein Interaction databases
DIP (DOE-UCLA)O75937
IntAct (EBI)O75937
FunCoupENSG00000126698
BioGRIDDNAJC8
STRING (EMBL)DNAJC8
ZODIACDNAJC8
Ontologies - Pathways
QuickGOO75937
Ontology : AmiGOmRNA splicing, via spliceosome  nucleoplasm  RNA splicing  gene expression  
Ontology : EGO-EBImRNA splicing, via spliceosome  nucleoplasm  RNA splicing  gene expression  
NDEx NetworkDNAJC8
Atlas of Cancer Signalling NetworkDNAJC8
Wikipedia pathwaysDNAJC8
Orthology - Evolution
OrthoDB22826
GeneTree (enSembl)ENSG00000126698
Phylogenetic Trees/Animal Genes : TreeFamDNAJC8
HOVERGENO75937
HOGENOMO75937
Homologs : HomoloGeneDNAJC8
Homology/Alignments : Family Browser (UCSC)DNAJC8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC8
dbVarDNAJC8
ClinVarDNAJC8
1000_GenomesDNAJC8 
Exome Variant ServerDNAJC8
ExAC (Exome Aggregation Consortium)DNAJC8 (select the gene name)
Genetic variants : HAPMAP22826
Genomic Variants (DGV)DNAJC8 [DGVbeta]
DECIPHER (Syndromes)1:28526790-28559542  ENSG00000126698
CONAN: Copy Number AnalysisDNAJC8 
Mutations
ICGC Data PortalDNAJC8 
TCGA Data PortalDNAJC8 
Broad Tumor PortalDNAJC8
OASIS PortalDNAJC8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJC8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJC8
DgiDB (Drug Gene Interaction Database)DNAJC8
DoCM (Curated mutations)DNAJC8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC8 (select a term)
intoGenDNAJC8
Cancer3DDNAJC8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDNAJC8
Genetic Testing Registry DNAJC8
NextProtO75937 [Medical]
TSGene22826
GENETestsDNAJC8
Huge Navigator DNAJC8 [HugePedia]
snp3D : Map Gene to Disease22826
BioCentury BCIQDNAJC8
ClinGenDNAJC8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22826
Chemical/Pharm GKB GenePA27425
Clinical trialDNAJC8
Miscellaneous
canSAR (ICR)DNAJC8 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC8
EVEXDNAJC8
GoPubMedDNAJC8
iHOPDNAJC8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:02:00 CET 2017

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