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DNAJC9-AS1 (DNAJC9 antisense RNA 1)

Identity

Alias_namesC10orf103
chromosome 10 open reading frame 103
DNAJC9 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)bA537A6.3
Other alias
HGNC (Hugo) DNAJC9-AS1
LocusID (NCBI) 414245
Atlas_Id 62571
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 75007125 and ends at 75036742 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC9-AS1   31432
Cards
Entrez_Gene (NCBI)DNAJC9-AS1  414245  DNAJC9 antisense RNA 1
AliasesC10orf103; bA537A6.3
GeneCards (Weizmann)DNAJC9-AS1
Ensembl hg19 (Hinxton)ENSG00000236756 [Gene_View]  chr10:75007125-75036742 [Contig_View]  DNAJC9-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000236756 [Gene_View]  chr10:75007125-75036742 [Contig_View]  DNAJC9-AS1 [Vega]
ICGC DataPortalENSG00000236756
TCGA cBioPortalDNAJC9-AS1
AceView (NCBI)DNAJC9-AS1
Genatlas (Paris)DNAJC9-AS1
WikiGenes414245
SOURCE (Princeton)DNAJC9-AS1
Genetics Home Reference (NIH)DNAJC9-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)DNAJC9-AS1  -     chr10:75007125-75036742 +  10q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DNAJC9-AS1  -     10q22.2   [Description]    (hg38-Dec_2013)
EnsemblDNAJC9-AS1 - 10q22.2 [CytoView hg19]  DNAJC9-AS1 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBIDNAJC9-AS1 [Mapview hg19]  DNAJC9-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043233 HG502989 HG502990
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)DNAJC9-AS1
Cluster EST : UnigeneHs.661857 [ NCBI ]
CGAP (NCI)Hs.661857
Alternative Splicing GalleryENSG00000236756
Gene ExpressionDNAJC9-AS1 [ NCBI-GEO ]   DNAJC9-AS1 [ EBI - ARRAY_EXPRESS ]   DNAJC9-AS1 [ SEEK ]   DNAJC9-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC9-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414245
GTEX Portal (Tissue expression)DNAJC9-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NH13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NH13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NH13
Splice isoforms : SwissVarA6NH13
PhosPhoSitePlusA6NH13
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DNAJC9-AS1
DMDM Disease mutations414245
Blocks (Seattle)DNAJC9-AS1
SuperfamilyA6NH13
Human Protein AtlasENSG00000236756
Peptide AtlasA6NH13
IPIIPI00639796   
Protein Interaction databases
DIP (DOE-UCLA)A6NH13
IntAct (EBI)A6NH13
FunCoupENSG00000236756
BioGRIDDNAJC9-AS1
STRING (EMBL)DNAJC9-AS1
ZODIACDNAJC9-AS1
Ontologies - Pathways
QuickGOA6NH13
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkDNAJC9-AS1
Atlas of Cancer Signalling NetworkDNAJC9-AS1
Wikipedia pathwaysDNAJC9-AS1
Orthology - Evolution
OrthoDB414245
GeneTree (enSembl)ENSG00000236756
Phylogenetic Trees/Animal Genes : TreeFamDNAJC9-AS1
HOVERGENA6NH13
HOGENOMA6NH13
Homologs : HomoloGeneDNAJC9-AS1
Homology/Alignments : Family Browser (UCSC)DNAJC9-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC9-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC9-AS1
dbVarDNAJC9-AS1
ClinVarDNAJC9-AS1
1000_GenomesDNAJC9-AS1 
Exome Variant ServerDNAJC9-AS1
ExAC (Exome Aggregation Consortium)DNAJC9-AS1 (select the gene name)
Genetic variants : HAPMAP414245
Genomic Variants (DGV)DNAJC9-AS1 [DGVbeta]
DECIPHER (Syndromes)10:75007125-75036742  ENSG00000236756
CONAN: Copy Number AnalysisDNAJC9-AS1 
Mutations
ICGC Data PortalDNAJC9-AS1 
TCGA Data PortalDNAJC9-AS1 
Broad Tumor PortalDNAJC9-AS1
OASIS PortalDNAJC9-AS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC9-AS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJC9-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch DNAJC9-AS1
DgiDB (Drug Gene Interaction Database)DNAJC9-AS1
DoCM (Curated mutations)DNAJC9-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC9-AS1 (select a term)
intoGenDNAJC9-AS1
Cancer3DDNAJC9-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDNAJC9-AS1
Genetic Testing Registry DNAJC9-AS1
NextProtA6NH13 [Medical]
TSGene414245
GENETestsDNAJC9-AS1
Huge Navigator DNAJC9-AS1 [HugePedia]
snp3D : Map Gene to Disease414245
BioCentury BCIQDNAJC9-AS1
ClinGenDNAJC9-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414245
Chemical/Pharm GKB GenePA134914452
Clinical trialDNAJC9-AS1
Miscellaneous
canSAR (ICR)DNAJC9-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC9-AS1
EVEXDNAJC9-AS1
GoPubMedDNAJC9-AS1
iHOPDNAJC9-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:02:00 CET 2017

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