Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DNAJC9 (DnaJ heat shock protein family (Hsp40) member C9)

Identity

Alias_namesDnaJ (Hsp40) homolog
Alias_symbol (synonym)JDD1
SB73
Other aliasHDJC9
HGNC (Hugo) DNAJC9
LocusID (NCBI) 23234
Atlas_Id 47031
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73241956 and ends at 73247331 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SMU1 (9p21.1) / DNAJC9 (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC9   19123
Cards
Entrez_Gene (NCBI)DNAJC9  23234  DnaJ heat shock protein family (Hsp40) member C9
AliasesHDJC9; JDD1; SB73
GeneCards (Weizmann)DNAJC9
Ensembl hg19 (Hinxton)ENSG00000213551 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213551 [Gene_View]  chr10:73241956-73247331 [Contig_View]  DNAJC9 [Vega]
ICGC DataPortalENSG00000213551
TCGA cBioPortalDNAJC9
AceView (NCBI)DNAJC9
Genatlas (Paris)DNAJC9
WikiGenes23234
SOURCE (Princeton)DNAJC9
Genetics Home Reference (NIH)DNAJC9
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJC9  -     chr10:73241956-73247331 -  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJC9  -     10q22.2   [Description]    (hg19-Feb_2009)
EnsemblDNAJC9 - 10q22.2 [CytoView hg19]  DNAJC9 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBIDNAJC9 [Mapview hg19]  DNAJC9 [Mapview hg38]
OMIM611206   
Gene and transcription
Genbank (Entrez)AF327347 AK074420 AK094162 BC136507 BQ002383
RefSeq transcript (Entrez)NM_015190
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJC9
Cluster EST : UnigeneHs.732485 [ NCBI ]
CGAP (NCI)Hs.732485
Alternative Splicing GalleryENSG00000213551
Gene ExpressionDNAJC9 [ NCBI-GEO ]   DNAJC9 [ EBI - ARRAY_EXPRESS ]   DNAJC9 [ SEEK ]   DNAJC9 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23234
GTEX Portal (Tissue expression)DNAJC9
Human Protein AtlasENSG00000213551-DNAJC9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXX5
Splice isoforms : SwissVarQ8WXX5
PhosPhoSitePlusQ8WXX5
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain    DnaJ_domain_CS   
Domain families : Pfam (Sanger)DnaJ (PF00226)   
Domain families : Pfam (NCBI)pfam00226   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJC9
DMDM Disease mutations23234
Blocks (Seattle)DNAJC9
SuperfamilyQ8WXX5
Human Protein Atlas [tissue]ENSG00000213551-DNAJC9 [tissue]
Peptide AtlasQ8WXX5
HPRD13237
IPIIPI00154975   IPI00014718   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXX5
IntAct (EBI)Q8WXX5
FunCoupENSG00000213551
BioGRIDDNAJC9
STRING (EMBL)DNAJC9
ZODIACDNAJC9
Ontologies - Pathways
QuickGOQ8WXX5
Ontology : AmiGOextracellular space  nucleus  nucleoplasm  cytoplasm  cytosol  plasma membrane  heat shock protein binding  positive regulation of ATPase activity  social behavior  
Ontology : EGO-EBIextracellular space  nucleus  nucleoplasm  cytoplasm  cytosol  plasma membrane  heat shock protein binding  positive regulation of ATPase activity  social behavior  
NDEx NetworkDNAJC9
Atlas of Cancer Signalling NetworkDNAJC9
Wikipedia pathwaysDNAJC9
Orthology - Evolution
OrthoDB23234
GeneTree (enSembl)ENSG00000213551
Phylogenetic Trees/Animal Genes : TreeFamDNAJC9
HOVERGENQ8WXX5
HOGENOMQ8WXX5
Homologs : HomoloGeneDNAJC9
Homology/Alignments : Family Browser (UCSC)DNAJC9
Gene fusions - Rearrangements
Tumor Fusion PortalDNAJC9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC9
dbVarDNAJC9
ClinVarDNAJC9
1000_GenomesDNAJC9 
Exome Variant ServerDNAJC9
ExAC (Exome Aggregation Consortium)ENSG00000213551
GNOMAD BrowserENSG00000213551
Genetic variants : HAPMAP23234
Genomic Variants (DGV)DNAJC9 [DGVbeta]
DECIPHERDNAJC9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJC9 
Mutations
ICGC Data PortalDNAJC9 
TCGA Data PortalDNAJC9 
Broad Tumor PortalDNAJC9
OASIS PortalDNAJC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNAJC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJC9
DgiDB (Drug Gene Interaction Database)DNAJC9
DoCM (Curated mutations)DNAJC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC9 (select a term)
intoGenDNAJC9
Cancer3DDNAJC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611206   
Orphanet
DisGeNETDNAJC9
MedgenDNAJC9
Genetic Testing Registry DNAJC9
NextProtQ8WXX5 [Medical]
TSGene23234
GENETestsDNAJC9
Target ValidationDNAJC9
Huge Navigator DNAJC9 [HugePedia]
snp3D : Map Gene to Disease23234
BioCentury BCIQDNAJC9
ClinGenDNAJC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23234
Chemical/Pharm GKB GenePA38797
Clinical trialDNAJC9
Miscellaneous
canSAR (ICR)DNAJC9 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC9
EVEXDNAJC9
GoPubMedDNAJC9
iHOPDNAJC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:10:56 CET 2017

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