Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DNALI1 (dynein axonemal light intermediate chain 1)

Identity

Alias_namesdynein
Alias_symbol (synonym)P28
hp28
dJ423B22.5
Other alias
HGNC (Hugo) DNALI1
LocusID (NCBI) 7802
Atlas_Id 45844
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 37556919 and ends at 37566857 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNALI1 (1p34.3) / CXCL1 (4q13.3)DNALI1 (1p34.3) / ING4 (12p13.31)SNIP1 (1p34.3) / DNALI1 (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNALI1   14353
Cards
Entrez_Gene (NCBI)DNALI1  7802  dynein axonemal light intermediate chain 1
AliasesP28; dJ423B22.5; hp28
GeneCards (Weizmann)DNALI1
Ensembl hg19 (Hinxton)ENSG00000163879 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163879 [Gene_View]  chr1:37556919-37566857 [Contig_View]  DNALI1 [Vega]
ICGC DataPortalENSG00000163879
TCGA cBioPortalDNALI1
AceView (NCBI)DNALI1
Genatlas (Paris)DNALI1
WikiGenes7802
SOURCE (Princeton)DNALI1
Genetics Home Reference (NIH)DNALI1
Genomic and cartography
GoldenPath hg38 (UCSC)DNALI1  -     chr1:37556919-37566857 +  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNALI1  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblDNALI1 - 1p34.3 [CytoView hg19]  DNALI1 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIDNALI1 [Mapview hg19]  DNALI1 [Mapview hg38]
OMIM602135   
Gene and transcription
Genbank (Entrez)AF006386 AI128097 AK126963 AK225935 AK290502
RefSeq transcript (Entrez)NM_003462
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNALI1
Cluster EST : UnigeneHs.406050 [ NCBI ]
CGAP (NCI)Hs.406050
Alternative Splicing GalleryENSG00000163879
Gene ExpressionDNALI1 [ NCBI-GEO ]   DNALI1 [ EBI - ARRAY_EXPRESS ]   DNALI1 [ SEEK ]   DNALI1 [ MEM ]
Gene Expression Viewer (FireBrowse)DNALI1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7802
GTEX Portal (Tissue expression)DNALI1
Human Protein AtlasENSG00000163879-DNALI1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14645   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14645  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14645
Splice isoforms : SwissVarO14645
PhosPhoSitePlusO14645
Domains : Interpro (EBI)Axonemal_dynein_light_chain   
Domain families : Pfam (Sanger)Ax_dynein_light (PF10211)   
Domain families : Pfam (NCBI)pfam10211   
Conserved Domain (NCBI)DNALI1
DMDM Disease mutations7802
Blocks (Seattle)DNALI1
SuperfamilyO14645
Human Protein Atlas [tissue]ENSG00000163879-DNALI1 [tissue]
Peptide AtlasO14645
HPRD03681
IPIIPI01009858   IPI00374479   
Protein Interaction databases
DIP (DOE-UCLA)O14645
IntAct (EBI)O14645
FunCoupENSG00000163879
BioGRIDDNALI1
STRING (EMBL)DNALI1
ZODIACDNALI1
Ontologies - Pathways
QuickGOO14645
Ontology : AmiGOmotor activity  protein binding  cytoplasm  axoneme  filopodium  dynein complex  dynein heavy chain binding  
Ontology : EGO-EBImotor activity  protein binding  cytoplasm  axoneme  filopodium  dynein complex  dynein heavy chain binding  
Pathways : KEGGHuntington's disease   
NDEx NetworkDNALI1
Atlas of Cancer Signalling NetworkDNALI1
Wikipedia pathwaysDNALI1
Orthology - Evolution
OrthoDB7802
GeneTree (enSembl)ENSG00000163879
Phylogenetic Trees/Animal Genes : TreeFamDNALI1
HOVERGENO14645
HOGENOMO14645
Homologs : HomoloGeneDNALI1
Homology/Alignments : Family Browser (UCSC)DNALI1
Gene fusions - Rearrangements
Tumor Fusion PortalDNALI1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNALI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNALI1
dbVarDNALI1
ClinVarDNALI1
1000_GenomesDNALI1 
Exome Variant ServerDNALI1
ExAC (Exome Aggregation Consortium)ENSG00000163879
GNOMAD BrowserENSG00000163879
Genetic variants : HAPMAP7802
Genomic Variants (DGV)DNALI1 [DGVbeta]
DECIPHERDNALI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNALI1 
Mutations
ICGC Data PortalDNALI1 
TCGA Data PortalDNALI1 
Broad Tumor PortalDNALI1
OASIS PortalDNALI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNALI1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNALI1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNALI1
DgiDB (Drug Gene Interaction Database)DNALI1
DoCM (Curated mutations)DNALI1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNALI1 (select a term)
intoGenDNALI1
Cancer3DDNALI1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602135   
Orphanet
DisGeNETDNALI1
MedgenDNALI1
Genetic Testing Registry DNALI1
NextProtO14645 [Medical]
TSGene7802
GENETestsDNALI1
Target ValidationDNALI1
Huge Navigator DNALI1 [HugePedia]
snp3D : Map Gene to Disease7802
BioCentury BCIQDNALI1
ClinGenDNALI1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7802
Chemical/Pharm GKB GenePA38381
Clinical trialDNALI1
Miscellaneous
canSAR (ICR)DNALI1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNALI1
EVEXDNALI1
GoPubMedDNALI1
iHOPDNALI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:10:56 CET 2017

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