Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DNTT (DNA nucleotidylexotransferase)

Identity

Alias_namesdeoxynucleotidyltransferase
Alias_symbol (synonym)TDT
Other alias
HGNC (Hugo) DNTT
LocusID (NCBI) 1791
Atlas_Id 40351
Location 10q24.1  [Link to chromosome band 10q24]
Location_base_pair Starts at 96304328 and ends at 96338564 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNTT   2983
Cards
Entrez_Gene (NCBI)DNTT  1791  DNA nucleotidylexotransferase
AliasesTDT
GeneCards (Weizmann)DNTT
Ensembl hg19 (Hinxton)ENSG00000107447 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107447 [Gene_View]  chr10:96304328-96338564 [Contig_View]  DNTT [Vega]
ICGC DataPortalENSG00000107447
TCGA cBioPortalDNTT
AceView (NCBI)DNTT
Genatlas (Paris)DNTT
WikiGenes1791
SOURCE (Princeton)DNTT
Genetics Home Reference (NIH)DNTT
Genomic and cartography
GoldenPath hg38 (UCSC)DNTT  -     chr10:96304328-96338564 +  10q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNTT  -     10q24.1   [Description]    (hg19-Feb_2009)
EnsemblDNTT - 10q24.1 [CytoView hg19]  DNTT - 10q24.1 [CytoView hg38]
Mapping of homologs : NCBIDNTT [Mapview hg19]  DNTT [Mapview hg38]
OMIM187410   
Gene and transcription
Genbank (Entrez)AB046378 AK130771 AK223317 AK313615 BC012920
RefSeq transcript (Entrez)NM_001017520 NM_004088
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNTT
Cluster EST : UnigeneHs.534206 [ NCBI ]
CGAP (NCI)Hs.534206
Alternative Splicing GalleryENSG00000107447
Gene ExpressionDNTT [ NCBI-GEO ]   DNTT [ EBI - ARRAY_EXPRESS ]   DNTT [ SEEK ]   DNTT [ MEM ]
Gene Expression Viewer (FireBrowse)DNTT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1791
GTEX Portal (Tissue expression)DNTT
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04053   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP04053  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04053
Splice isoforms : SwissVarP04053
PhosPhoSitePlusP04053
Domaine pattern : Prosite (Expaxy)BRCT (PS50172)    DNA_POLYMERASE_X (PS00522)   
Domains : Interpro (EBI)BRCT_dom    DNA-dir_DNA_pol_X    DNA_pol-X_BS    DNA_pol_b-like_N    DNA_pol_B_palm_palm    DNA_pol_lambd_fingers_domain    DNA_pol_X    DNA_pol_X_lyase_dom    PolB_thumb    TdT    TdT/Mu   
Domain families : Pfam (Sanger)BRCT (PF00533)    DNA_pol_B_palm (PF14792)    DNA_pol_B_thumb (PF14791)    DNA_pol_lambd_f (PF10391)    HHH_8 (PF14716)   
Domain families : Pfam (NCBI)pfam00533    pfam14792    pfam14791    pfam10391    pfam14716   
Domain families : Smart (EMBL)BRCT (SM00292)  POLXc (SM00483)  
Conserved Domain (NCBI)DNTT
DMDM Disease mutations1791
Blocks (Seattle)DNTT
PDB (SRS)2COE   
PDB (PDBSum)2COE   
PDB (IMB)2COE   
PDB (RSDB)2COE   
Structural Biology KnowledgeBase2COE   
SCOP (Structural Classification of Proteins)2COE   
CATH (Classification of proteins structures)2COE   
SuperfamilyP04053
Human Protein AtlasENSG00000107447
Peptide AtlasP04053
HPRD08925
IPIIPI00219676   IPI00604441   IPI00815999   
Protein Interaction databases
DIP (DOE-UCLA)P04053
IntAct (EBI)P04053
FunCoupENSG00000107447
BioGRIDDNTT
STRING (EMBL)DNTT
ZODIACDNTT
Ontologies - Pathways
QuickGOP04053
Ontology : AmiGOnuclear chromatin  euchromatin  DNA binding  DNA-directed DNA polymerase activity  DNA nucleotidylexotransferase activity  protein binding  nucleus  nucleoplasm  cytosol  DNA metabolic process  DNA modification  nuclear matrix  response to ATP  metal ion binding  DNA biosynthetic process  
Ontology : EGO-EBInuclear chromatin  euchromatin  DNA binding  DNA-directed DNA polymerase activity  DNA nucleotidylexotransferase activity  protein binding  nucleus  nucleoplasm  cytosol  DNA metabolic process  DNA modification  nuclear matrix  response to ATP  metal ion binding  DNA biosynthetic process  
Pathways : KEGGNon-homologous end-joining    Hematopoietic cell lineage   
NDEx NetworkDNTT
Atlas of Cancer Signalling NetworkDNTT
Wikipedia pathwaysDNTT
Orthology - Evolution
OrthoDB1791
GeneTree (enSembl)ENSG00000107447
Phylogenetic Trees/Animal Genes : TreeFamDNTT
HOVERGENP04053
HOGENOMP04053
Homologs : HomoloGeneDNTT
Homology/Alignments : Family Browser (UCSC)DNTT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNTT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNTT
dbVarDNTT
ClinVarDNTT
1000_GenomesDNTT 
Exome Variant ServerDNTT
ExAC (Exome Aggregation Consortium)DNTT (select the gene name)
Genetic variants : HAPMAP1791
Genomic Variants (DGV)DNTT [DGVbeta]
DECIPHERDNTT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNTT 
Mutations
ICGC Data PortalDNTT 
TCGA Data PortalDNTT 
Broad Tumor PortalDNTT
OASIS PortalDNTT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNTT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDNTT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNTT
DgiDB (Drug Gene Interaction Database)DNTT
DoCM (Curated mutations)DNTT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNTT (select a term)
intoGenDNTT
Cancer3DDNTT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM187410   
Orphanet
MedgenDNTT
Genetic Testing Registry DNTT
NextProtP04053 [Medical]
TSGene1791
GENETestsDNTT
Target ValidationDNTT
Huge Navigator DNTT [HugePedia]
snp3D : Map Gene to Disease1791
BioCentury BCIQDNTT
ClinGenDNTT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1791
Chemical/Pharm GKB GenePA27449
Clinical trialDNTT
Miscellaneous
canSAR (ICR)DNTT (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNTT
EVEXDNTT
GoPubMedDNTT
iHOPDNTT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:31:34 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.