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DOHH (deoxyhypusine hydroxylase)

Identity

Alias_namesHLRC1
HEAT-like (PBS lyase) repeat containing 1
Alias_symbol (synonym)MGC4293
Other aliashDOHH
HGNC (Hugo) DOHH
LocusID (NCBI) 83475
Atlas_Id 53136
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 3490821 and ends at 3500623 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DOHH   28662
Cards
Entrez_Gene (NCBI)DOHH  83475  deoxyhypusine hydroxylase
AliasesHLRC1; hDOHH
GeneCards (Weizmann)DOHH
Ensembl hg19 (Hinxton)ENSG00000129932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129932 [Gene_View]  ENSG00000129932 [Sequence]  chr19:3490821-3500623 [Contig_View]  DOHH [Vega]
ICGC DataPortalENSG00000129932
TCGA cBioPortalDOHH
AceView (NCBI)DOHH
Genatlas (Paris)DOHH
WikiGenes83475
SOURCE (Princeton)DOHH
Genetics Home Reference (NIH)DOHH
Genomic and cartography
GoldenPath hg38 (UCSC)DOHH  -     chr19:3490821-3500623 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DOHH  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblDOHH - 19p13.3 [CytoView hg19]  DOHH - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIDOHH [Mapview hg19]  DOHH [Mapview hg38]
OMIM611262   
Gene and transcription
Genbank (Entrez)AW195139 BC002817 BC009863 BG491509 BU624567
RefSeq transcript (Entrez)NM_001145165 NM_031304
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DOHH
Cluster EST : UnigeneHs.609012 [ NCBI ]
CGAP (NCI)Hs.609012
Alternative Splicing GalleryENSG00000129932
Gene ExpressionDOHH [ NCBI-GEO ]   DOHH [ EBI - ARRAY_EXPRESS ]   DOHH [ SEEK ]   DOHH [ MEM ]
Gene Expression Viewer (FireBrowse)DOHH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83475
GTEX Portal (Tissue expression)DOHH
Human Protein AtlasENSG00000129932-DOHH [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BU89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BU89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BU89
Splice isoforms : SwissVarQ9BU89
PhosPhoSitePlusQ9BU89
Domaine pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Deoxyhypusine_hydroxylase    HEAT_type_2    PBS_lyase_HEAT   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)EZ_HEAT (SM00567)  
Conserved Domain (NCBI)DOHH
DMDM Disease mutations83475
Blocks (Seattle)DOHH
PDB (RSDB)4D4Z    4D50   
PDB Europe4D4Z    4D50   
PDB (PDBSum)4D4Z    4D50   
PDB (IMB)4D4Z    4D50   
Structural Biology KnowledgeBase4D4Z    4D50   
SCOP (Structural Classification of Proteins)4D4Z    4D50   
CATH (Classification of proteins structures)4D4Z    4D50   
SuperfamilyQ9BU89
Human Protein Atlas [tissue]ENSG00000129932-DOHH [tissue]
Peptide AtlasQ9BU89
HPRD14627
IPIIPI00171856   
Protein Interaction databases
DIP (DOE-UCLA)Q9BU89
IntAct (EBI)Q9BU89
FunCoupENSG00000129932
BioGRIDDOHH
STRING (EMBL)DOHH
ZODIACDOHH
Ontologies - Pathways
QuickGOQ9BU89
Ontology : AmiGOiron ion binding  iron ion binding  protein binding  cellular_component  cytosol  peptidyl-lysine modification to peptidyl-hypusine  peptidyl-lysine modification to peptidyl-hypusine  deoxyhypusine monooxygenase activity  deoxyhypusine monooxygenase activity  cofactor binding  cofactor binding  oxidation-reduction process  
Ontology : EGO-EBIiron ion binding  iron ion binding  protein binding  cellular_component  cytosol  peptidyl-lysine modification to peptidyl-hypusine  peptidyl-lysine modification to peptidyl-hypusine  deoxyhypusine monooxygenase activity  deoxyhypusine monooxygenase activity  cofactor binding  cofactor binding  oxidation-reduction process  
NDEx NetworkDOHH
Atlas of Cancer Signalling NetworkDOHH
Wikipedia pathwaysDOHH
Orthology - Evolution
OrthoDB83475
GeneTree (enSembl)ENSG00000129932
Phylogenetic Trees/Animal Genes : TreeFamDOHH
HOGENOMQ9BU89
Homologs : HomoloGeneDOHH
Homology/Alignments : Family Browser (UCSC)DOHH
Gene fusions - Rearrangements
Fusion : QuiverDOHH
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDOHH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DOHH
dbVarDOHH
ClinVarDOHH
1000_GenomesDOHH 
Exome Variant ServerDOHH
ExAC (Exome Aggregation Consortium)ENSG00000129932
GNOMAD BrowserENSG00000129932
Varsome BrowserDOHH
Genetic variants : HAPMAP83475
Genomic Variants (DGV)DOHH [DGVbeta]
DECIPHERDOHH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDOHH 
Mutations
ICGC Data PortalDOHH 
TCGA Data PortalDOHH 
Broad Tumor PortalDOHH
OASIS PortalDOHH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDOHH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDOHH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DOHH
DgiDB (Drug Gene Interaction Database)DOHH
DoCM (Curated mutations)DOHH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DOHH (select a term)
intoGenDOHH
Cancer3DDOHH(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611262   
Orphanet
DisGeNETDOHH
MedgenDOHH
Genetic Testing Registry DOHH
NextProtQ9BU89 [Medical]
TSGene83475
GENETestsDOHH
Target ValidationDOHH
Huge Navigator DOHH [HugePedia]
snp3D : Map Gene to Disease83475
BioCentury BCIQDOHH
ClinGenDOHH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83475
Chemical/Pharm GKB GenePA142671678
Clinical trialDOHH
Miscellaneous
canSAR (ICR)DOHH (select the gene name)
DataMed IndexDOHH
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDOHH
EVEXDOHH
GoPubMedDOHH
iHOPDOHH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 17 18:10:09 CET 2019

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