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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

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DOK7 (docking protein 7)

Identity

Other namesC4orf25
CMS1B
HGNC (Hugo) DOK7
LocusID (NCBI) 285489
Location 4p16.3
Location_base_pair Starts at 3465033 and ends at 3496209 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)DOK7   26594
Cards
Entrez_Gene (NCBI)DOK7  285489  docking protein 7
GeneCards (Weizmann)DOK7
Ensembl hg19 (Hinxton)ENSG00000175920 [Gene_View]  chr4:3465033-3496209 [Contig_View]  DOK7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175920 [Gene_View]  chr4:3465033-3496209 [Contig_View]  DOK7 [Vega]
ICGC DataPortalENSG00000175920
cBioPortalDOK7
AceView (NCBI)DOK7
Genatlas (Paris)DOK7
WikiGenes285489
SOURCE (Princeton)DOK7
Genomic and cartography
GoldenPath hg19 (UCSC)DOK7  -     chr4:3465033-3496209 +  4p16.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DOK7  -     4p16.3   [Description]    (hg38-Dec_2013)
EnsemblDOK7 - 4p16.3 [CytoView hg19]  DOK7 - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIDOK7 [Mapview hg19]  DOK7 [Mapview hg38]
OMIM208150   254300   610285   
Gene and transcription
Genbank (Entrez)AB220918 AK075037 AK091037 AK096456 BC043568
RefSeq transcript (Entrez)NM_001164673 NM_001256896 NM_001301071 NM_173660
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NG_013072 NT_006051 NW_001838896 NW_004929314
Consensus coding sequences : CCDS (NCBI)DOK7
Cluster EST : UnigeneHs.701584 [ NCBI ]
CGAP (NCI)Hs.701584
Alternative Splicing : Fast-db (Paris)GSHG0033417
Alternative Splicing GalleryENSG00000175920
Gene ExpressionDOK7 [ NCBI-GEO ]     DOK7 [ SEEK ]   DOK7 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ18PE1 (Uniprot)
NextProtQ18PE1  [Medical]
With graphics : InterProQ18PE1
Splice isoforms : SwissVarQ18PE1 (Swissvar)
Domaine pattern : Prosite (Expaxy)IRS_PTB (PS51064)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Insln_rcpt_S1    PH_like_dom    Pleckstrin_homology   
Related proteins : CluSTrQ18PE1
Domain families : Pfam (Sanger)IRS (PF02174)   
Domain families : Pfam (NCBI)pfam02174   
Domain families : Smart (EMBL)PH (SM00233)  
DMDM Disease mutations285489
Blocks (Seattle)Q18PE1
Human Protein AtlasENSG00000175920
Peptide AtlasQ18PE1
HPRD08744
IPIIPI00783590   IPI00168218   IPI00783555   IPI00383898   IPI00944456   
Protein Interaction databases
DIP (DOE-UCLA)Q18PE1
IntAct (EBI)Q18PE1
FunCoupENSG00000175920
BioGRIDDOK7
IntegromeDBDOK7
STRING (EMBL)DOK7
Ontologies - Pathways
QuickGOQ18PE1
Ontology : AmiGOinsulin receptor binding  plasma membrane  neuromuscular junction development  protein kinase binding  cell junction  neuromuscular junction  phosphatidylinositol binding  receptor clustering  positive regulation of protein tyrosine kinase activity  
Ontology : EGO-EBIinsulin receptor binding  plasma membrane  neuromuscular junction development  protein kinase binding  cell junction  neuromuscular junction  phosphatidylinositol binding  receptor clustering  positive regulation of protein tyrosine kinase activity  
Protein Interaction DatabaseDOK7
DoCM (Curated mutations)DOK7
Wikipedia pathwaysDOK7
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerDOK7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DOK7
dbVarDOK7
ClinVarDOK7
1000_GenomesDOK7 
Exome Variant ServerDOK7
SNP (GeneSNP Utah)DOK7
SNP : HGBaseDOK7
Genetic variants : HAPMAPDOK7
Genomic Variants (DGV)DOK7 [DGVbeta]
Mutations
ICGC Data PortalENSG00000175920 
Somatic Mutations in Cancer : COSMICDOK7 
CONAN: Copy Number AnalysisDOK7 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:3465033-3496209
Mutations and Diseases : HGMDDOK7
OMIM208150    254300    610285   
MedgenDOK7
NextProtQ18PE1 [Medical]
GENETestsDOK7
Disease Genetic AssociationDOK7
Huge Navigator DOK7 [HugePedia]  DOK7 [HugeCancerGEM]
snp3D : Map Gene to Disease285489
DGIdb (Drug Gene Interaction db)DOK7
General knowledge
Homologs : HomoloGeneDOK7
Homology/Alignments : Family Browser (UCSC)DOK7
Phylogenetic Trees/Animal Genes : TreeFamDOK7
Chemical/Protein Interactions : CTD285489
Chemical/Pharm GKB GenePA162384035
Clinical trialDOK7
Cancer Resource (Charite)ENSG00000175920
Other databases
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
CoreMineDOK7
GoPubMedDOK7
iHOPDOK7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 15:31:41 CET 2015

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