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DOLPP1 (dolichyldiphosphatase 1)

Identity

Alias_namesdolichyl pyrophosphate phosphatase 1
Alias_symbol (synonym)LSFR2
Other alias
HGNC (Hugo) DOLPP1
LocusID (NCBI) 57171
Atlas_Id 62597
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 129081104 and ends at 129090438 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CRAT (9q34.11) / DOLPP1 (9q34.11)DOLPP1 (9q34.11) / SPTAN1 (9q34.11)DOLPP1 (9q34.11) / TBC1D13 (9q34.11)
DOLPP1 (9q34.11) / ZNF804B (7q21.13)TSC1 (9q34.13) / DOLPP1 (9q34.11)DOLPP1 SPTAN1
DOLPP1 TBC1D13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DOLPP1   29565
Cards
Entrez_Gene (NCBI)DOLPP1  57171  dolichyldiphosphatase 1
AliasesLSFR2
GeneCards (Weizmann)DOLPP1
Ensembl hg19 (Hinxton)ENSG00000167130 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167130 [Gene_View]  chr9:129081104-129090438 [Contig_View]  DOLPP1 [Vega]
ICGC DataPortalENSG00000167130
TCGA cBioPortalDOLPP1
AceView (NCBI)DOLPP1
Genatlas (Paris)DOLPP1
WikiGenes57171
SOURCE (Princeton)DOLPP1
Genetics Home Reference (NIH)DOLPP1
Genomic and cartography
GoldenPath hg38 (UCSC)DOLPP1  -     chr9:129081104-129090438 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DOLPP1  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblDOLPP1 - 9q34.11 [CytoView hg19]  DOLPP1 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIDOLPP1 [Mapview hg19]  DOLPP1 [Mapview hg38]
OMIM614516   
Gene and transcription
Genbank (Entrez)AK290713 AK293627 AY189675 BC009493 BC022553
RefSeq transcript (Entrez)NM_001135917 NM_020438
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DOLPP1
Cluster EST : UnigeneHs.21701 [ NCBI ]
CGAP (NCI)Hs.21701
Alternative Splicing GalleryENSG00000167130
Gene ExpressionDOLPP1 [ NCBI-GEO ]   DOLPP1 [ EBI - ARRAY_EXPRESS ]   DOLPP1 [ SEEK ]   DOLPP1 [ MEM ]
Gene Expression Viewer (FireBrowse)DOLPP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57171
GTEX Portal (Tissue expression)DOLPP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YN1
Splice isoforms : SwissVarQ86YN1
Catalytic activity : Enzyme3.6.1.43 [ Enzyme-Expasy ]   3.6.1.433.6.1.43 [ IntEnz-EBI ]   3.6.1.43 [ BRENDA ]   3.6.1.43 [ KEGG ]   
PhosPhoSitePlusQ86YN1
Domains : Interpro (EBI)P_Acid_Pase_2/haloperoxidase   
Domain families : Pfam (Sanger)PAP2 (PF01569)   
Domain families : Pfam (NCBI)pfam01569   
Domain families : Smart (EMBL)acidPPc (SM00014)  
Conserved Domain (NCBI)DOLPP1
DMDM Disease mutations57171
Blocks (Seattle)DOLPP1
SuperfamilyQ86YN1
Human Protein AtlasENSG00000167130
Peptide AtlasQ86YN1
HPRD16835
IPIIPI00329410   IPI01014607   IPI00880166   IPI00880001   IPI00844463   
Protein Interaction databases
DIP (DOE-UCLA)Q86YN1
IntAct (EBI)Q86YN1
FunCoupENSG00000167130
BioGRIDDOLPP1
STRING (EMBL)DOLPP1
ZODIACDOLPP1
Ontologies - Pathways
QuickGOQ86YN1
Ontology : AmiGOendoplasmic reticulum membrane  protein N-linked glycosylation  dolichyl diphosphate biosynthetic process  integral component of endoplasmic reticulum membrane  dolichyldiphosphatase activity  dolichyldiphosphatase activity  
Ontology : EGO-EBIendoplasmic reticulum membrane  protein N-linked glycosylation  dolichyl diphosphate biosynthetic process  integral component of endoplasmic reticulum membrane  dolichyldiphosphatase activity  dolichyldiphosphatase activity  
Pathways : KEGGN-Glycan biosynthesis   
NDEx NetworkDOLPP1
Atlas of Cancer Signalling NetworkDOLPP1
Wikipedia pathwaysDOLPP1
Orthology - Evolution
OrthoDB57171
GeneTree (enSembl)ENSG00000167130
Phylogenetic Trees/Animal Genes : TreeFamDOLPP1
HOVERGENQ86YN1
HOGENOMQ86YN1
Homologs : HomoloGeneDOLPP1
Homology/Alignments : Family Browser (UCSC)DOLPP1
Gene fusions - Rearrangements
Fusion: TCGADOLPP1 SPTAN1
Fusion: TCGADOLPP1 TBC1D13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDOLPP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DOLPP1
dbVarDOLPP1
ClinVarDOLPP1
1000_GenomesDOLPP1 
Exome Variant ServerDOLPP1
ExAC (Exome Aggregation Consortium)DOLPP1 (select the gene name)
Genetic variants : HAPMAP57171
Genomic Variants (DGV)DOLPP1 [DGVbeta]
DECIPHERDOLPP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDOLPP1 
Mutations
ICGC Data PortalDOLPP1 
TCGA Data PortalDOLPP1 
Broad Tumor PortalDOLPP1
OASIS PortalDOLPP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDOLPP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDOLPP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DOLPP1
DgiDB (Drug Gene Interaction Database)DOLPP1
DoCM (Curated mutations)DOLPP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DOLPP1 (select a term)
intoGenDOLPP1
Cancer3DDOLPP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614516   
Orphanet
MedgenDOLPP1
Genetic Testing Registry DOLPP1
NextProtQ86YN1 [Medical]
TSGene57171
GENETestsDOLPP1
Target ValidationDOLPP1
Huge Navigator DOLPP1 [HugePedia]
snp3D : Map Gene to Disease57171
BioCentury BCIQDOLPP1
ClinGenDOLPP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57171
Chemical/Pharm GKB GenePA134937229
Clinical trialDOLPP1
Miscellaneous
canSAR (ICR)DOLPP1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDOLPP1
EVEXDOLPP1
GoPubMedDOLPP1
iHOPDOLPP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:46:19 CEST 2017

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