Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DOPEY2 (dopey family member 2)

Identity

Alias_namesC21orf5
chromosome 21 open reading frame 5
Alias_symbol (synonym)KIAA0933
Other alias21orf5
HGNC (Hugo) DOPEY2
LocusID (NCBI) 9980
Atlas_Id 62600
Location 21q22.12  [Link to chromosome band 21q22]
Location_base_pair Starts at 36156782 and ends at 36294274 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DOPEY2 (21q22.12) / CBR3 (21q22.12)DOPEY2 (21q22.12) / DOPEY2 (21q22.12)DOPEY2 (21q22.12) / SH3BGR (21q22.2)
DOPEY2 (21q22.12) / TRPM2 (21q22.3)FAM222B (17q11.2) / DOPEY2 (21q22.12)MORC3 (21q22.12) / DOPEY2 (21q22.12)
DOPEY2 TRPM2DOPEY2 SH3BGRDOPEY2 CBR3
MORC3 DOPEY2C17orf63 DOPEY2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DOPEY2   1291
Cards
Entrez_Gene (NCBI)DOPEY2  9980  dopey family member 2
Aliases21orf5; C21orf5
GeneCards (Weizmann)DOPEY2
Ensembl hg19 (Hinxton)ENSG00000142197 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142197 [Gene_View]  chr21:36156782-36294274 [Contig_View]  DOPEY2 [Vega]
ICGC DataPortalENSG00000142197
TCGA cBioPortalDOPEY2
AceView (NCBI)DOPEY2
Genatlas (Paris)DOPEY2
WikiGenes9980
SOURCE (Princeton)DOPEY2
Genetics Home Reference (NIH)DOPEY2
Genomic and cartography
GoldenPath hg38 (UCSC)DOPEY2  -     chr21:36156782-36294274 +  21q22.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DOPEY2  -     21q22.12   [Description]    (hg19-Feb_2009)
EnsemblDOPEY2 - 21q22.12 [CytoView hg19]  DOPEY2 - 21q22.12 [CytoView hg38]
Mapping of homologs : NCBIDOPEY2 [Mapview hg19]  DOPEY2 [Mapview hg38]
OMIM604803   
Gene and transcription
Genbank (Entrez)AB023150 AJ001857 AJ237839 AK025095 AK026478
RefSeq transcript (Entrez)NM_001320714 NM_005128
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DOPEY2
Cluster EST : UnigeneHs.204575 [ NCBI ]
CGAP (NCI)Hs.204575
Alternative Splicing GalleryENSG00000142197
Gene ExpressionDOPEY2 [ NCBI-GEO ]   DOPEY2 [ EBI - ARRAY_EXPRESS ]   DOPEY2 [ SEEK ]   DOPEY2 [ MEM ]
Gene Expression Viewer (FireBrowse)DOPEY2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9980
GTEX Portal (Tissue expression)DOPEY2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3R5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3R5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3R5
Splice isoforms : SwissVarQ9Y3R5
PhosPhoSitePlusQ9Y3R5
Domains : Interpro (EBI)Dopey_N   
Domain families : Pfam (Sanger)Dopey_N (PF04118)   
Domain families : Pfam (NCBI)pfam04118   
Conserved Domain (NCBI)DOPEY2
DMDM Disease mutations9980
Blocks (Seattle)DOPEY2
SuperfamilyQ9Y3R5
Human Protein AtlasENSG00000142197
Peptide AtlasQ9Y3R5
HPRD07271
IPIIPI00294653   IPI00796463   IPI01024977   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3R5
IntAct (EBI)Q9Y3R5
FunCoupENSG00000142197
BioGRIDDOPEY2
STRING (EMBL)DOPEY2
ZODIACDOPEY2
Ontologies - Pathways
QuickGOQ9Y3R5
Ontology : AmiGOGolgi membrane  molecular_function  endosome  trans-Golgi network  cytosol  Golgi to endosome transport  Golgi to endosome transport  endoplasmic reticulum organization  multicellular organism development  protein transport  cognition  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  molecular_function  endosome  trans-Golgi network  cytosol  Golgi to endosome transport  Golgi to endosome transport  endoplasmic reticulum organization  multicellular organism development  protein transport  cognition  extracellular exosome  
NDEx NetworkDOPEY2
Atlas of Cancer Signalling NetworkDOPEY2
Wikipedia pathwaysDOPEY2
Orthology - Evolution
OrthoDB9980
GeneTree (enSembl)ENSG00000142197
Phylogenetic Trees/Animal Genes : TreeFamDOPEY2
HOVERGENQ9Y3R5
HOGENOMQ9Y3R5
Homologs : HomoloGeneDOPEY2
Homology/Alignments : Family Browser (UCSC)DOPEY2
Gene fusions - Rearrangements
Fusion: TCGADOPEY2 TRPM2
Fusion: TCGADOPEY2 SH3BGR
Fusion: TCGADOPEY2 CBR3
Fusion: TCGAMORC3 DOPEY2
Fusion: TCGAC17orf63 DOPEY2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDOPEY2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DOPEY2
dbVarDOPEY2
ClinVarDOPEY2
1000_GenomesDOPEY2 
Exome Variant ServerDOPEY2
ExAC (Exome Aggregation Consortium)DOPEY2 (select the gene name)
Genetic variants : HAPMAP9980
Genomic Variants (DGV)DOPEY2 [DGVbeta]
DECIPHERDOPEY2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDOPEY2 
Mutations
ICGC Data PortalDOPEY2 
TCGA Data PortalDOPEY2 
Broad Tumor PortalDOPEY2
OASIS PortalDOPEY2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDOPEY2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDOPEY2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DOPEY2
DgiDB (Drug Gene Interaction Database)DOPEY2
DoCM (Curated mutations)DOPEY2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DOPEY2 (select a term)
intoGenDOPEY2
Cancer3DDOPEY2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604803   
Orphanet
MedgenDOPEY2
Genetic Testing Registry DOPEY2
NextProtQ9Y3R5 [Medical]
TSGene9980
GENETestsDOPEY2
Target ValidationDOPEY2
Huge Navigator DOPEY2 [HugePedia]
snp3D : Map Gene to Disease9980
BioCentury BCIQDOPEY2
ClinGenDOPEY2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9980
Chemical/Pharm GKB GenePA25845
Clinical trialDOPEY2
Miscellaneous
canSAR (ICR)DOPEY2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDOPEY2
EVEXDOPEY2
GoPubMedDOPEY2
iHOPDOPEY2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:46:20 CEST 2017

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