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DPCD (deleted in primary ciliary dyskinesia homolog (mouse))

Identity

Alias_symbol (synonym)DKFZP566F084
RP11-529I10.4
Other alias-
HGNC (Hugo) DPCD
LocusID (NCBI) 25911
Atlas_Id 62601
Location 10q24.32  [Link to chromosome band 10q24]
Location_base_pair Starts at 101588288 and ends at 101609664 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DOCK1 (10q26.2) / DPCD (10q24.32)PMEL (12q13.2) / DPCD (10q24.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(10;10)(q24;q26) DOCK1/DPCD

External links

Nomenclature
HGNC (Hugo)DPCD   24542
Cards
Entrez_Gene (NCBI)DPCD  25911  deleted in primary ciliary dyskinesia homolog (mouse)
Aliases
GeneCards (Weizmann)DPCD
Ensembl hg19 (Hinxton)ENSG00000166171 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166171 [Gene_View]  ENSG00000166171 [Sequence]  chr10:101588288-101609664 [Contig_View]  DPCD [Vega]
ICGC DataPortalENSG00000166171
TCGA cBioPortalDPCD
AceView (NCBI)DPCD
Genatlas (Paris)DPCD
WikiGenes25911
SOURCE (Princeton)DPCD
Genetics Home Reference (NIH)DPCD
Genomic and cartography
GoldenPath hg38 (UCSC)DPCD  -     chr10:101588288-101609664 +  10q24.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPCD  -     10q24.32   [Description]    (hg19-Feb_2009)
EnsemblDPCD - 10q24.32 [CytoView hg19]  DPCD - 10q24.32 [CytoView hg38]
Mapping of homologs : NCBIDPCD [Mapview hg19]  DPCD [Mapview hg38]
OMIM616467   
Gene and transcription
Genbank (Entrez)AK290154 AK296220 AL110240 AY532267 BC001082
RefSeq transcript (Entrez)NM_001329742 NM_001329743 NM_001329744 NM_001329745 NM_001329746 NM_015448
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPCD
Cluster EST : UnigeneHs.735511 [ NCBI ]
CGAP (NCI)Hs.735511
Alternative Splicing GalleryENSG00000166171
Gene ExpressionDPCD [ NCBI-GEO ]   DPCD [ EBI - ARRAY_EXPRESS ]   DPCD [ SEEK ]   DPCD [ MEM ]
Gene Expression Viewer (FireBrowse)DPCD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25911
GTEX Portal (Tissue expression)DPCD
Human Protein AtlasENSG00000166171-DPCD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVM2
Splice isoforms : SwissVarQ9BVM2
PhosPhoSitePlusQ9BVM2
Domains : Interpro (EBI)DPCD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DPCD
DMDM Disease mutations25911
Blocks (Seattle)DPCD
SuperfamilyQ9BVM2
Human Protein Atlas [tissue]ENSG00000166171-DPCD [tissue]
Peptide AtlasQ9BVM2
HPRD13247
IPIIPI00063962   IPI00908602   IPI00552309   IPI00552565   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVM2
IntAct (EBI)Q9BVM2
FunCoupENSG00000166171
BioGRIDDPCD
STRING (EMBL)DPCD
ZODIACDPCD
Ontologies - Pathways
QuickGOQ9BVM2
Ontology : AmiGOepithelial cilium movement  protein binding  nucleus  spermatogenesis  determination of left/right symmetry  lateral ventricle development  third ventricle development  flagellated sperm motility  left/right pattern formation  
Ontology : EGO-EBIepithelial cilium movement  protein binding  nucleus  spermatogenesis  determination of left/right symmetry  lateral ventricle development  third ventricle development  flagellated sperm motility  left/right pattern formation  
NDEx NetworkDPCD
Atlas of Cancer Signalling NetworkDPCD
Wikipedia pathwaysDPCD
Orthology - Evolution
OrthoDB25911
GeneTree (enSembl)ENSG00000166171
Phylogenetic Trees/Animal Genes : TreeFamDPCD
HOVERGENQ9BVM2
HOGENOMQ9BVM2
Homologs : HomoloGeneDPCD
Homology/Alignments : Family Browser (UCSC)DPCD
Gene fusions - Rearrangements
Fusion : QuiverDPCD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPCD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPCD
dbVarDPCD
ClinVarDPCD
1000_GenomesDPCD 
Exome Variant ServerDPCD
ExAC (Exome Aggregation Consortium)ENSG00000166171
GNOMAD BrowserENSG00000166171
Varsome BrowserDPCD
Genetic variants : HAPMAP25911
Genomic Variants (DGV)DPCD [DGVbeta]
DECIPHERDPCD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPCD 
Mutations
ICGC Data PortalDPCD 
TCGA Data PortalDPCD 
Broad Tumor PortalDPCD
OASIS PortalDPCD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPCD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPCD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPCD
DgiDB (Drug Gene Interaction Database)DPCD
DoCM (Curated mutations)DPCD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPCD (select a term)
intoGenDPCD
Cancer3DDPCD(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616467   
Orphanet
DisGeNETDPCD
MedgenDPCD
Genetic Testing Registry DPCD
NextProtQ9BVM2 [Medical]
TSGene25911
GENETestsDPCD
Target ValidationDPCD
Huge Navigator DPCD [HugePedia]
snp3D : Map Gene to Disease25911
BioCentury BCIQDPCD
ClinGenDPCD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25911
Chemical/Pharm GKB GenePA165548502
Clinical trialDPCD
Miscellaneous
canSAR (ICR)DPCD (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPCD
EVEXDPCD
GoPubMedDPCD
iHOPDPCD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 13:43:09 CEST 2018
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