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DPCR1 (diffuse panbronchiolitis critical region 1)

Identity

Alias_symbol (synonym)PBLT
bCX105N19.6
Other aliasC6orf37
HGNC (Hugo) DPCR1
LocusID (NCBI) 135656
Atlas_Id 62602
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 30941000 and ends at 30954221 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DPCR1 (6p21.33) / DPCR1 (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPCR1   21666
Cards
Entrez_Gene (NCBI)DPCR1  135656  diffuse panbronchiolitis critical region 1
AliasesC6orf37; PBLT
GeneCards (Weizmann)DPCR1
Ensembl hg19 (Hinxton)ENSG00000168631 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168631 [Gene_View]  ENSG00000168631 [Sequence]  chr6:30941000-30954221 [Contig_View]  DPCR1 [Vega]
ICGC DataPortalENSG00000168631
TCGA cBioPortalDPCR1
AceView (NCBI)DPCR1
Genatlas (Paris)DPCR1
WikiGenes135656
SOURCE (Princeton)DPCR1
Genetics Home Reference (NIH)DPCR1
Genomic and cartography
GoldenPath hg38 (UCSC)DPCR1  -     chr6:30941000-30954221 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPCR1  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblDPCR1 - 6p21.33 [CytoView hg19]  DPCR1 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIDPCR1 [Mapview hg19]  DPCR1 [Mapview hg38]
OMIM613928   
Gene and transcription
Genbank (Entrez)AB064272 AL833738 BC069477 BC101661 BC101663
RefSeq transcript (Entrez)NM_080870
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167247 NT_167248
Consensus coding sequences : CCDS (NCBI)DPCR1
Cluster EST : UnigeneHs.631993 [ NCBI ]
CGAP (NCI)Hs.631993
Alternative Splicing GalleryENSG00000168631
Gene ExpressionDPCR1 [ NCBI-GEO ]   DPCR1 [ EBI - ARRAY_EXPRESS ]   DPCR1 [ SEEK ]   DPCR1 [ MEM ]
Gene Expression Viewer (FireBrowse)DPCR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135656
GTEX Portal (Tissue expression)DPCR1
Human Protein AtlasENSG00000168631-DPCR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3MIW9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3MIW9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3MIW9
Splice isoforms : SwissVarQ3MIW9
PhosPhoSitePlusQ3MIW9
Domains : Interpro (EBI)DPCR1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DPCR1
DMDM Disease mutations135656
Blocks (Seattle)DPCR1
SuperfamilyQ3MIW9
Human Protein Atlas [tissue]ENSG00000168631-DPCR1 [tissue]
Peptide AtlasQ3MIW9
HPRD16073
IPIIPI00885122   IPI00645951   IPI01022009   IPI00142856   IPI00930431   IPI00893470   
Protein Interaction databases
DIP (DOE-UCLA)Q3MIW9
IntAct (EBI)Q3MIW9
FunCoupENSG00000168631
BioGRIDDPCR1
STRING (EMBL)DPCR1
ZODIACDPCR1
Ontologies - Pathways
QuickGOQ3MIW9
Ontology : AmiGOintegral component of membrane  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIintegral component of membrane  positive regulation of protein targeting to mitochondrion  
NDEx NetworkDPCR1
Atlas of Cancer Signalling NetworkDPCR1
Wikipedia pathwaysDPCR1
Orthology - Evolution
OrthoDB135656
GeneTree (enSembl)ENSG00000168631
Phylogenetic Trees/Animal Genes : TreeFamDPCR1
HOVERGENQ3MIW9
HOGENOMQ3MIW9
Homologs : HomoloGeneDPCR1
Homology/Alignments : Family Browser (UCSC)DPCR1
Gene fusions - Rearrangements
Fusion : QuiverDPCR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPCR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPCR1
dbVarDPCR1
ClinVarDPCR1
1000_GenomesDPCR1 
Exome Variant ServerDPCR1
ExAC (Exome Aggregation Consortium)ENSG00000168631
GNOMAD BrowserENSG00000168631
Varsome BrowserDPCR1
Genetic variants : HAPMAP135656
Genomic Variants (DGV)DPCR1 [DGVbeta]
DECIPHERDPCR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPCR1 
Mutations
ICGC Data PortalDPCR1 
TCGA Data PortalDPCR1 
Broad Tumor PortalDPCR1
OASIS PortalDPCR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPCR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPCR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPCR1
DgiDB (Drug Gene Interaction Database)DPCR1
DoCM (Curated mutations)DPCR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPCR1 (select a term)
intoGenDPCR1
Cancer3DDPCR1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613928   
Orphanet17929   
DisGeNETDPCR1
MedgenDPCR1
Genetic Testing Registry DPCR1
NextProtQ3MIW9 [Medical]
TSGene135656
GENETestsDPCR1
Target ValidationDPCR1
Huge Navigator DPCR1 [HugePedia]
snp3D : Map Gene to Disease135656
BioCentury BCIQDPCR1
ClinGenDPCR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD135656
Chemical/Pharm GKB GenePA134926573
Clinical trialDPCR1
Miscellaneous
canSAR (ICR)DPCR1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPCR1
EVEXDPCR1
GoPubMedDPCR1
iHOPDPCR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:43:09 CEST 2018

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