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DPF1 (double PHD fingers 1)

Identity

Alias_namesD4, zinc and double PHD fingers family 1
Alias_symbol (synonym)neuro-d4
NEUD4
BAF45b
Other alias
HGNC (Hugo) DPF1
LocusID (NCBI) 8193
Atlas_Id 62605
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 38211006 and ends at 38224250 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SPINT2 (19q13.2) / DPF1 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPF1   20225
Cards
Entrez_Gene (NCBI)DPF1  8193  double PHD fingers 1
AliasesBAF45b; NEUD4; neuro-d4
GeneCards (Weizmann)DPF1
Ensembl hg19 (Hinxton)ENSG00000011332 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000011332 [Gene_View]  chr19:38211006-38224250 [Contig_View]  DPF1 [Vega]
ICGC DataPortalENSG00000011332
TCGA cBioPortalDPF1
AceView (NCBI)DPF1
Genatlas (Paris)DPF1
WikiGenes8193
SOURCE (Princeton)DPF1
Genetics Home Reference (NIH)DPF1
Genomic and cartography
GoldenPath hg38 (UCSC)DPF1  -     chr19:38211006-38224250 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPF1  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblDPF1 - 19q13.2 [CytoView hg19]  DPF1 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIDPF1 [Mapview hg19]  DPF1 [Mapview hg38]
OMIM601670   
Gene and transcription
Genbank (Entrez)AI857563 AI885717 AK094632 AK127198 AK297581
RefSeq transcript (Entrez)NM_001135155 NM_001135156 NM_001289978 NM_004647
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPF1
Cluster EST : UnigeneHs.631576 [ NCBI ]
CGAP (NCI)Hs.631576
Alternative Splicing GalleryENSG00000011332
Gene ExpressionDPF1 [ NCBI-GEO ]   DPF1 [ EBI - ARRAY_EXPRESS ]   DPF1 [ SEEK ]   DPF1 [ MEM ]
Gene Expression Viewer (FireBrowse)DPF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8193
GTEX Portal (Tissue expression)DPF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92782   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92782  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92782
Splice isoforms : SwissVarQ92782
PhosPhoSitePlusQ92782
Domaine pattern : Prosite (Expaxy)ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Requiem/DPF_N_dom    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PHD (PF00628)    Requiem_N (PF14051)   
Domain families : Pfam (NCBI)pfam00628    pfam14051   
Domain families : Smart (EMBL)PHD (SM00249)  
Conserved Domain (NCBI)DPF1
DMDM Disease mutations8193
Blocks (Seattle)DPF1
SuperfamilyQ92782
Human Protein AtlasENSG00000011332
Peptide AtlasQ92782
HPRD03393
IPIIPI00291761   IPI00216452   IPI00642063   IPI00909392   IPI00926658   IPI00926373   IPI00926583   IPI00925874   
Protein Interaction databases
DIP (DOE-UCLA)Q92782
IntAct (EBI)Q92782
FunCoupENSG00000011332
BioGRIDDPF1
STRING (EMBL)DPF1
ZODIACDPF1
Ontologies - Pathways
QuickGOQ92782
Ontology : AmiGOcytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  apoptotic process  nervous system development  zinc ion binding  nBAF complex  
Ontology : EGO-EBIcytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  apoptotic process  nervous system development  zinc ion binding  nBAF complex  
NDEx NetworkDPF1
Atlas of Cancer Signalling NetworkDPF1
Wikipedia pathwaysDPF1
Orthology - Evolution
OrthoDB8193
GeneTree (enSembl)ENSG00000011332
Phylogenetic Trees/Animal Genes : TreeFamDPF1
HOVERGENQ92782
HOGENOMQ92782
Homologs : HomoloGeneDPF1
Homology/Alignments : Family Browser (UCSC)DPF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPF1
dbVarDPF1
ClinVarDPF1
1000_GenomesDPF1 
Exome Variant ServerDPF1
ExAC (Exome Aggregation Consortium)DPF1 (select the gene name)
Genetic variants : HAPMAP8193
Genomic Variants (DGV)DPF1 [DGVbeta]
DECIPHERDPF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPF1 
Mutations
ICGC Data PortalDPF1 
TCGA Data PortalDPF1 
Broad Tumor PortalDPF1
OASIS PortalDPF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPF1
DgiDB (Drug Gene Interaction Database)DPF1
DoCM (Curated mutations)DPF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPF1 (select a term)
intoGenDPF1
Cancer3DDPF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601670   
Orphanet
MedgenDPF1
Genetic Testing Registry DPF1
NextProtQ92782 [Medical]
TSGene8193
GENETestsDPF1
Target ValidationDPF1
Huge Navigator DPF1 [HugePedia]
snp3D : Map Gene to Disease8193
BioCentury BCIQDPF1
ClinGenDPF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8193
Chemical/Pharm GKB GenePA134879894
Clinical trialDPF1
Miscellaneous
canSAR (ICR)DPF1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPF1
EVEXDPF1
GoPubMedDPF1
iHOPDPF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:46:21 CEST 2017

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