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DPH2 (DPH2 homolog (S. cerevisiae))

Identity

Alias_namesDPH2L2
diptheria toxin resistance protein required for diphthamide biosynthesis-like 2 (S. cerevisiae)
DPH2-like 2 (S. cerevisiae)
DPH2 homolog (S. cerevisiae)
Other alias
HGNC (Hugo) DPH2
LocusID (NCBI) 1802
Atlas_Id 62606
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 44435653 and ends at 44439043 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GAS5 (1q25.1) / DPH2 (1p34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPH2   3004
Cards
Entrez_Gene (NCBI)DPH2  1802  DPH2 homolog (S. cerevisiae)
AliasesDPH2L2
GeneCards (Weizmann)DPH2
Ensembl hg19 (Hinxton)ENSG00000132768 [Gene_View]  chr1:44435653-44439043 [Contig_View]  DPH2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132768 [Gene_View]  chr1:44435653-44439043 [Contig_View]  DPH2 [Vega]
ICGC DataPortalENSG00000132768
TCGA cBioPortalDPH2
AceView (NCBI)DPH2
Genatlas (Paris)DPH2
WikiGenes1802
SOURCE (Princeton)DPH2
Genetics Home Reference (NIH)DPH2
Genomic and cartography
GoldenPath hg19 (UCSC)DPH2  -     chr1:44435653-44439043 +  1p34.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DPH2  -     1p34.1   [Description]    (hg38-Dec_2013)
EnsemblDPH2 - 1p34.1 [CytoView hg19]  DPH2 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIDPH2 [Mapview hg19]  DPH2 [Mapview hg38]
OMIM603456   
Gene and transcription
Genbank (Entrez)AA252672 AF053003 AK091303 AK297933 AK315506
RefSeq transcript (Entrez)NM_001039589 NM_001384 NM_201399
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)DPH2
Cluster EST : UnigeneHs.632398 [ NCBI ]
CGAP (NCI)Hs.632398
Alternative Splicing GalleryENSG00000132768
Gene ExpressionDPH2 [ NCBI-GEO ]   DPH2 [ EBI - ARRAY_EXPRESS ]   DPH2 [ SEEK ]   DPH2 [ MEM ]
Gene Expression Viewer (FireBrowse)DPH2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1802
GTEX Portal (Tissue expression)DPH2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQC3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQC3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQC3
Splice isoforms : SwissVarQ9BQC3
PhosPhoSitePlusQ9BQC3
Domains : Interpro (EBI)DHP2_eu    DPH1/DPH2   
Domain families : Pfam (Sanger)Diphthamide_syn (PF01866)   
Domain families : Pfam (NCBI)pfam01866   
Conserved Domain (NCBI)DPH2
DMDM Disease mutations1802
Blocks (Seattle)DPH2
SuperfamilyQ9BQC3
Human Protein AtlasENSG00000132768
Peptide AtlasQ9BQC3
HPRD16023
IPIIPI00106549   IPI00908597   IPI00983090   IPI00984897   IPI00977759   IPI00976559   IPI00737502   IPI00977169   IPI00976009   IPI00985456   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQC3
IntAct (EBI)Q9BQC3
FunCoupENSG00000132768
BioGRIDDPH2
STRING (EMBL)DPH2
ZODIACDPH2
Ontologies - Pathways
QuickGOQ9BQC3
Ontology : AmiGOprotein binding  cytosol  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  post-translational protein modification  cellular protein metabolic process  2-(3-amino-3-carboxypropyl)histidine synthase activity  
Ontology : EGO-EBIprotein binding  cytosol  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  post-translational protein modification  cellular protein metabolic process  2-(3-amino-3-carboxypropyl)histidine synthase activity  
NDEx NetworkDPH2
Atlas of Cancer Signalling NetworkDPH2
Wikipedia pathwaysDPH2
Orthology - Evolution
OrthoDB1802
GeneTree (enSembl)ENSG00000132768
Phylogenetic Trees/Animal Genes : TreeFamDPH2
HOVERGENQ9BQC3
HOGENOMQ9BQC3
Homologs : HomoloGeneDPH2
Homology/Alignments : Family Browser (UCSC)DPH2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPH2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPH2
dbVarDPH2
ClinVarDPH2
1000_GenomesDPH2 
Exome Variant ServerDPH2
ExAC (Exome Aggregation Consortium)DPH2 (select the gene name)
Genetic variants : HAPMAP1802
Genomic Variants (DGV)DPH2 [DGVbeta]
DECIPHER (Syndromes)1:44435653-44439043  ENSG00000132768
CONAN: Copy Number AnalysisDPH2 
Mutations
ICGC Data PortalDPH2 
TCGA Data PortalDPH2 
Broad Tumor PortalDPH2
OASIS PortalDPH2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPH2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPH2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPH2
DgiDB (Drug Gene Interaction Database)DPH2
DoCM (Curated mutations)DPH2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPH2 (select a term)
intoGenDPH2
Cancer3DDPH2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603456   
Orphanet
MedgenDPH2
Genetic Testing Registry DPH2
NextProtQ9BQC3 [Medical]
TSGene1802
GENETestsDPH2
Huge Navigator DPH2 [HugePedia]
snp3D : Map Gene to Disease1802
BioCentury BCIQDPH2
ClinGenDPH2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1802
Chemical/Pharm GKB GenePA27462
Clinical trialDPH2
Miscellaneous
canSAR (ICR)DPH2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPH2
EVEXDPH2
GoPubMedDPH2
iHOPDPH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:02:07 CET 2017

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