Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DPH3P1 (diphthamide biosynthesis 3 pseudogene 1)

Identity

Alias_namesC20orf143
ZCSL1
DPH3B
chromosome 20 open reading frame 143
zinc finger, CSL-type containing 1
DPH3B, KTI11 homolog B (S. cerevisiae)
DPH3, KTI11 homolog (S. cerevisiae) pseudogene 1
Alias_symbol (synonym)dJ885L7.5
Other alias
HGNC (Hugo) DPH3P1
LocusID (NCBI) 100132911
Atlas_Id 62607
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62844566 and ends at 62846191 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPH3P1   16136
Cards
Entrez_Gene (NCBI)DPH3P1  100132911  diphthamide biosynthesis 3 pseudogene 1
AliasesC20orf143; DPH3B; ZCSL1
GeneCards (Weizmann)DPH3P1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:62844566-62846191 [Contig_View]  DPH3P1 [Vega]
TCGA cBioPortalDPH3P1
AceView (NCBI)DPH3P1
Genatlas (Paris)DPH3P1
WikiGenes100132911
SOURCE (Princeton)DPH3P1
Genetics Home Reference (NIH)DPH3P1
Genomic and cartography
GoldenPath hg38 (UCSC)DPH3P1  -     chr20:62844566-62846191 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPH3P1  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblDPH3P1 - 20q13.33 [CytoView hg19]  DPH3P1 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIDPH3P1 [Mapview hg19]  DPH3P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_080750
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPH3P1
Gene ExpressionDPH3P1 [ NCBI-GEO ]   DPH3P1 [ EBI - ARRAY_EXPRESS ]   DPH3P1 [ SEEK ]   DPH3P1 [ MEM ]
Gene Expression Viewer (FireBrowse)DPH3P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132911
GTEX Portal (Tissue expression)DPH3P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4G8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4G8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4G8
Splice isoforms : SwissVarQ9H4G8
PhosPhoSitePlusQ9H4G8
Domaine pattern : Prosite (Expaxy)ZF_DPH (PS51074)   
Domains : Interpro (EBI)Znf_DHP   
Domain families : Pfam (Sanger)zf-CSL (PF05207)   
Domain families : Pfam (NCBI)pfam05207   
Conserved Domain (NCBI)DPH3P1
DMDM Disease mutations100132911
Blocks (Seattle)DPH3P1
SuperfamilyQ9H4G8
Peptide AtlasQ9H4G8
IPIIPI00032760   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4G8
IntAct (EBI)Q9H4G8
BioGRIDDPH3P1
STRING (EMBL)DPH3P1
ZODIACDPH3P1
Ontologies - Pathways
QuickGOQ9H4G8
Ontology : AmiGOmetal ion binding  
Ontology : EGO-EBImetal ion binding  
NDEx NetworkDPH3P1
Atlas of Cancer Signalling NetworkDPH3P1
Wikipedia pathwaysDPH3P1
Orthology - Evolution
OrthoDB100132911
Phylogenetic Trees/Animal Genes : TreeFamDPH3P1
HOVERGENQ9H4G8
HOGENOMQ9H4G8
Homologs : HomoloGeneDPH3P1
Homology/Alignments : Family Browser (UCSC)DPH3P1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPH3P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPH3P1
dbVarDPH3P1
ClinVarDPH3P1
1000_GenomesDPH3P1 
Exome Variant ServerDPH3P1
ExAC (Exome Aggregation Consortium)DPH3P1 (select the gene name)
Genetic variants : HAPMAP100132911
Genomic Variants (DGV)DPH3P1 [DGVbeta]
DECIPHERDPH3P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPH3P1 
Mutations
ICGC Data PortalDPH3P1 
TCGA Data PortalDPH3P1 
Broad Tumor PortalDPH3P1
OASIS PortalDPH3P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDPH3P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPH3P1
DgiDB (Drug Gene Interaction Database)DPH3P1
DoCM (Curated mutations)DPH3P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPH3P1 (select a term)
intoGenDPH3P1
Cancer3DDPH3P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDPH3P1
Genetic Testing Registry DPH3P1
NextProtQ9H4G8 [Medical]
TSGene100132911
GENETestsDPH3P1
Target ValidationDPH3P1
Huge Navigator DPH3P1 [HugePedia]
snp3D : Map Gene to Disease100132911
BioCentury BCIQDPH3P1
ClinGenDPH3P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132911
Chemical/Pharm GKB GenePA25686
Clinical trialDPH3P1
Miscellaneous
canSAR (ICR)DPH3P1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPH3P1
EVEXDPH3P1
GoPubMedDPH3P1
iHOPDPH3P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:46:21 CEST 2017

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