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DPH5 (diphthamide biosynthesis 5)

Identity

Alias_namesDPH5 homolog (S. cerevisiae)
Alias_symbol (synonym)CGI-30
Other aliasAD-018
HSPC143
NPD015
HGNC (Hugo) DPH5
LocusID (NCBI) 51611
Atlas_Id 62608
Location 1p21.2  [Link to chromosome band 1p21]
Location_base_pair Starts at 100989625 and ends at 101025806 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DPH5 (1p21.2) / ARSD (Xp22.33)DPH5 (1p21.2) / LOC283867 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPH5   24270
Cards
Entrez_Gene (NCBI)DPH5  51611  diphthamide biosynthesis 5
AliasesAD-018; CGI-30; HSPC143; NPD015
GeneCards (Weizmann)DPH5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:100989625-101025806 [Contig_View]  DPH5 [Vega]
TCGA cBioPortalDPH5
AceView (NCBI)DPH5
Genatlas (Paris)DPH5
WikiGenes51611
SOURCE (Princeton)DPH5
Genetics Home Reference (NIH)DPH5
Genomic and cartography
GoldenPath hg38 (UCSC)DPH5  -     chr1:100989625-101025806 -  1p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPH5  -     1p21.2   [Description]    (hg19-Feb_2009)
EnsemblDPH5 - 1p21.2 [CytoView hg19]  DPH5 - 1p21.2 [CytoView hg38]
Mapping of homologs : NCBIDPH5 [Mapview hg19]  DPH5 [Mapview hg38]
OMIM611075   
Gene and transcription
Genbank (Entrez)AF132964 AF157319 AF161492 AF248965 AK125485
RefSeq transcript (Entrez)NM_001077394 NM_001077395 NM_015958
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPH5
Cluster EST : UnigeneHs.440776 [ NCBI ]
CGAP (NCI)Hs.440776
Gene ExpressionDPH5 [ NCBI-GEO ]   DPH5 [ EBI - ARRAY_EXPRESS ]   DPH5 [ SEEK ]   DPH5 [ MEM ]
Gene Expression Viewer (FireBrowse)DPH5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51611
GTEX Portal (Tissue expression)DPH5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2P9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2P9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2P9
Splice isoforms : SwissVarQ9H2P9
Catalytic activity : Enzyme2.1.1.314 [ Enzyme-Expasy ]   2.1.1.3142.1.1.314 [ IntEnz-EBI ]   2.1.1.314 [ BRENDA ]   2.1.1.314 [ KEGG ]   
PhosPhoSitePlusQ9H2P9
Domains : Interpro (EBI)4pyrrol_Mease    4pyrrole_Mease_sub1    4pyrrole_Mease_sub2    Dphthn_synthase   
Domain families : Pfam (Sanger)TP_methylase (PF00590)   
Domain families : Pfam (NCBI)pfam00590   
Conserved Domain (NCBI)DPH5
DMDM Disease mutations51611
Blocks (Seattle)DPH5
SuperfamilyQ9H2P9
Peptide AtlasQ9H2P9
HPRD13037
IPIIPI00941449   IPI00006419   IPI00375822   IPI00375823   IPI00375824   IPI00984865   IPI00978184   IPI00978787   IPI00902709   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2P9
IntAct (EBI)Q9H2P9
BioGRIDDPH5
STRING (EMBL)DPH5
ZODIACDPH5
Ontologies - Pathways
QuickGOQ9H2P9
Ontology : AmiGOdiphthine synthase activity  diphthine synthase activity  diphthine synthase activity  cellular_component  cytosol  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  methylation  
Ontology : EGO-EBIdiphthine synthase activity  diphthine synthase activity  diphthine synthase activity  cellular_component  cytosol  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  methylation  
NDEx NetworkDPH5
Atlas of Cancer Signalling NetworkDPH5
Wikipedia pathwaysDPH5
Orthology - Evolution
OrthoDB51611
Phylogenetic Trees/Animal Genes : TreeFamDPH5
HOVERGENQ9H2P9
HOGENOMQ9H2P9
Homologs : HomoloGeneDPH5
Homology/Alignments : Family Browser (UCSC)DPH5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPH5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPH5
dbVarDPH5
ClinVarDPH5
1000_GenomesDPH5 
Exome Variant ServerDPH5
ExAC (Exome Aggregation Consortium)DPH5 (select the gene name)
Genetic variants : HAPMAP51611
Genomic Variants (DGV)DPH5 [DGVbeta]
DECIPHERDPH5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPH5 
Mutations
ICGC Data PortalDPH5 
TCGA Data PortalDPH5 
Broad Tumor PortalDPH5
OASIS PortalDPH5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPH5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPH5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPH5
DgiDB (Drug Gene Interaction Database)DPH5
DoCM (Curated mutations)DPH5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPH5 (select a term)
intoGenDPH5
Cancer3DDPH5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611075   
Orphanet
MedgenDPH5
Genetic Testing Registry DPH5
NextProtQ9H2P9 [Medical]
TSGene51611
GENETestsDPH5
Target ValidationDPH5
Huge Navigator DPH5 [HugePedia]
snp3D : Map Gene to Disease51611
BioCentury BCIQDPH5
ClinGenDPH5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51611
Chemical/Pharm GKB GenePA142671956
Clinical trialDPH5
Miscellaneous
canSAR (ICR)DPH5 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPH5
EVEXDPH5
GoPubMedDPH5
iHOPDPH5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:35 CEST 2017

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