Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DPH7 (diphthamide biosynthesis 7)

Identity

Alias_namesC9orf112
WDR85
chromosome 9 open reading frame 112
WD repeat domain 85
Alias_symbol (synonym)FLJ90634
RRT2
Other alias
HGNC (Hugo) DPH7
LocusID (NCBI) 92715
Atlas_Id 62611
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137554444 and ends at 137578935 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DPH7 (9q34.3) / PPP2R4 (9q34.11)PNPLA7 (9q34.3) / DPH7 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPH7   25199
Cards
Entrez_Gene (NCBI)DPH7  92715  diphthamide biosynthesis 7
AliasesC9orf112; RRT2; WDR85
GeneCards (Weizmann)DPH7
Ensembl hg19 (Hinxton)ENSG00000148399 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148399 [Gene_View]  chr9:137554444-137578935 [Contig_View]  DPH7 [Vega]
ICGC DataPortalENSG00000148399
TCGA cBioPortalDPH7
AceView (NCBI)DPH7
Genatlas (Paris)DPH7
WikiGenes92715
SOURCE (Princeton)DPH7
Genetics Home Reference (NIH)DPH7
Genomic and cartography
GoldenPath hg38 (UCSC)DPH7  -     chr9:137554444-137578935 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPH7  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblDPH7 - 9q34.3 [CytoView hg19]  DPH7 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIDPH7 [Mapview hg19]  DPH7 [Mapview hg38]
OMIM613210   
Gene and transcription
Genbank (Entrez)AA252248 AJ420445 AK075115 AK094389 AK307180
RefSeq transcript (Entrez)NM_001346370 NM_001346371 NM_001346372 NM_001346373 NM_001346374 NM_001346375 NM_001346376 NM_001346377 NM_001346378 NM_001346379 NM_001346380 NM_001346381 NM_001346382 NM_001346383 NM_001346384 NM_001346385 NM_001346386 NM_001346387 NM_001346388 NM_001346389 NM_001346390 NM_001346391 NM_001346392 NM_001346393 NM_001346394 NM_001346395 NM_001346396 NM_138778
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPH7
Cluster EST : UnigeneHs.292570 [ NCBI ]
CGAP (NCI)Hs.292570
Alternative Splicing GalleryENSG00000148399
Gene ExpressionDPH7 [ NCBI-GEO ]   DPH7 [ EBI - ARRAY_EXPRESS ]   DPH7 [ SEEK ]   DPH7 [ MEM ]
Gene Expression Viewer (FireBrowse)DPH7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92715
GTEX Portal (Tissue expression)DPH7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTV6
Splice isoforms : SwissVarQ9BTV6
Catalytic activity : Enzyme3.1.1.97 [ Enzyme-Expasy ]   3.1.1.973.1.1.97 [ IntEnz-EBI ]   3.1.1.97 [ BRENDA ]   3.1.1.97 [ KEGG ]   
PhosPhoSitePlusQ9BTV6
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)DPH7
DMDM Disease mutations92715
Blocks (Seattle)DPH7
SuperfamilyQ9BTV6
Human Protein AtlasENSG00000148399
Peptide AtlasQ9BTV6
HPRD12934
IPIIPI00030511   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTV6
IntAct (EBI)Q9BTV6
FunCoupENSG00000148399
BioGRIDDPH7
STRING (EMBL)DPH7
ZODIACDPH7
Ontologies - Pathways
QuickGOQ9BTV6
Ontology : AmiGOpeptidyl-diphthamide biosynthetic process from peptidyl-histidine  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  diphthine methylesterase activity  
Ontology : EGO-EBIpeptidyl-diphthamide biosynthetic process from peptidyl-histidine  peptidyl-diphthamide biosynthetic process from peptidyl-histidine  diphthine methylesterase activity  
NDEx NetworkDPH7
Atlas of Cancer Signalling NetworkDPH7
Wikipedia pathwaysDPH7
Orthology - Evolution
OrthoDB92715
GeneTree (enSembl)ENSG00000148399
Phylogenetic Trees/Animal Genes : TreeFamDPH7
HOVERGENQ9BTV6
HOGENOMQ9BTV6
Homologs : HomoloGeneDPH7
Homology/Alignments : Family Browser (UCSC)DPH7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPH7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPH7
dbVarDPH7
ClinVarDPH7
1000_GenomesDPH7 
Exome Variant ServerDPH7
ExAC (Exome Aggregation Consortium)DPH7 (select the gene name)
Genetic variants : HAPMAP92715
Genomic Variants (DGV)DPH7 [DGVbeta]
DECIPHERDPH7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPH7 
Mutations
ICGC Data PortalDPH7 
TCGA Data PortalDPH7 
Broad Tumor PortalDPH7
OASIS PortalDPH7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDPH7
BioMutasearch DPH7
DgiDB (Drug Gene Interaction Database)DPH7
DoCM (Curated mutations)DPH7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPH7 (select a term)
intoGenDPH7
Cancer3DDPH7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613210   
Orphanet
MedgenDPH7
Genetic Testing Registry DPH7
NextProtQ9BTV6 [Medical]
TSGene92715
GENETestsDPH7
Huge Navigator DPH7 [HugePedia]
snp3D : Map Gene to Disease92715
BioCentury BCIQDPH7
ClinGenDPH7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92715
Chemical/Pharm GKB GenePA134942088
Clinical trialDPH7
Miscellaneous
canSAR (ICR)DPH7 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPH7
EVEXDPH7
GoPubMedDPH7
iHOPDPH7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:08:57 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.