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DPM3 (dolichyl-phosphate mannosyltransferase subunit 3)

Identity

Alias_namesdolichyl-phosphate mannosyltransferase polypeptide 3
Alias_symbol (synonym)MGC34275
MGC125904
MGC125905
Other aliasCDG1O
HGNC (Hugo) DPM3
LocusID (NCBI) 54344
Atlas_Id 62613
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155139891 and ends at 155140407 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPM3   3007
Cards
Entrez_Gene (NCBI)DPM3  54344  dolichyl-phosphate mannosyltransferase subunit 3
AliasesCDG1O
GeneCards (Weizmann)DPM3
Ensembl hg19 (Hinxton)ENSG00000179085 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179085 [Gene_View]  chr1:155139891-155140407 [Contig_View]  DPM3 [Vega]
ICGC DataPortalENSG00000179085
TCGA cBioPortalDPM3
AceView (NCBI)DPM3
Genatlas (Paris)DPM3
WikiGenes54344
SOURCE (Princeton)DPM3
Genetics Home Reference (NIH)DPM3
Genomic and cartography
GoldenPath hg38 (UCSC)DPM3  -     chr1:155139891-155140407 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPM3  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblDPM3 - 1q22 [CytoView hg19]  DPM3 - 1q22 [CytoView hg38]
Mapping of homologs : NCBIDPM3 [Mapview hg19]  DPM3 [Mapview hg38]
OMIM605951   612937   
Gene and transcription
Genbank (Entrez)AB028128 AF312922 AF312923 AK293625 BC032223
RefSeq transcript (Entrez)NM_018973 NM_153741
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPM3
Cluster EST : UnigeneHs.110477 [ NCBI ]
CGAP (NCI)Hs.110477
Alternative Splicing GalleryENSG00000179085
Gene ExpressionDPM3 [ NCBI-GEO ]   DPM3 [ EBI - ARRAY_EXPRESS ]   DPM3 [ SEEK ]   DPM3 [ MEM ]
Gene Expression Viewer (FireBrowse)DPM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54344
GTEX Portal (Tissue expression)DPM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2X0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2X0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2X0
Splice isoforms : SwissVarQ9P2X0
PhosPhoSitePlusQ9P2X0
Domains : Interpro (EBI)DPM3   
Domain families : Pfam (Sanger)DPM3 (PF08285)   
Domain families : Pfam (NCBI)pfam08285   
Conserved Domain (NCBI)DPM3
DMDM Disease mutations54344
Blocks (Seattle)DPM3
SuperfamilyQ9P2X0
Human Protein AtlasENSG00000179085
Peptide AtlasQ9P2X0
HPRD16179
IPIIPI00004454   IPI00297475   IPI01018998   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2X0
IntAct (EBI)Q9P2X0
FunCoupENSG00000179085
BioGRIDDPM3
STRING (EMBL)DPM3
ZODIACDPM3
Ontologies - Pathways
QuickGOQ9P2X0
Ontology : AmiGOdolichyl-phosphate beta-D-mannosyltransferase activity  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  carbohydrate metabolic process  GPI anchor biosynthetic process  GPI anchor biosynthetic process  membrane  protein N-linked glycosylation via asparagine  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  integral component of endoplasmic reticulum membrane  mannosyltransferase complex  regulation of protein stability  dolichol-phosphate-mannose synthase complex  protein mannosylation  protein O-linked mannosylation  
Ontology : EGO-EBIdolichyl-phosphate beta-D-mannosyltransferase activity  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  carbohydrate metabolic process  GPI anchor biosynthetic process  GPI anchor biosynthetic process  membrane  protein N-linked glycosylation via asparagine  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  integral component of endoplasmic reticulum membrane  mannosyltransferase complex  regulation of protein stability  dolichol-phosphate-mannose synthase complex  protein mannosylation  protein O-linked mannosylation  
Pathways : KEGGN-Glycan biosynthesis   
NDEx NetworkDPM3
Atlas of Cancer Signalling NetworkDPM3
Wikipedia pathwaysDPM3
Orthology - Evolution
OrthoDB54344
GeneTree (enSembl)ENSG00000179085
Phylogenetic Trees/Animal Genes : TreeFamDPM3
HOVERGENQ9P2X0
HOGENOMQ9P2X0
Homologs : HomoloGeneDPM3
Homology/Alignments : Family Browser (UCSC)DPM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPM3
dbVarDPM3
ClinVarDPM3
1000_GenomesDPM3 
Exome Variant ServerDPM3
ExAC (Exome Aggregation Consortium)DPM3 (select the gene name)
Genetic variants : HAPMAP54344
Genomic Variants (DGV)DPM3 [DGVbeta]
DECIPHERDPM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPM3 
Mutations
ICGC Data PortalDPM3 
TCGA Data PortalDPM3 
Broad Tumor PortalDPM3
OASIS PortalDPM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch DPM3
DgiDB (Drug Gene Interaction Database)DPM3
DoCM (Curated mutations)DPM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPM3 (select a term)
intoGenDPM3
Cancer3DDPM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605951    612937   
Orphanet20063   
MedgenDPM3
Genetic Testing Registry DPM3
NextProtQ9P2X0 [Medical]
TSGene54344
GENETestsDPM3
Target ValidationDPM3
Huge Navigator DPM3 [HugePedia]
snp3D : Map Gene to Disease54344
BioCentury BCIQDPM3
ClinGenDPM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54344
Chemical/Pharm GKB GenePA27465
Clinical trialDPM3
Miscellaneous
canSAR (ICR)DPM3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPM3
EVEXDPM3
GoPubMedDPM3
iHOPDPM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:35 CEST 2017

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