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DPPA2 (developmental pluripotency associated 2)

Identity

Alias_symbol (synonym)PESCRG1
CT100
Other aliasECAT15-2
HGNC (Hugo) DPPA2
LocusID (NCBI) 151871
Atlas_Id 50321
Location 3q13.13  [Link to chromosome band 3q13]
Location_base_pair Starts at 109293788 and ends at 109316517 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SCARF2 (22q11.21) / DPPA2 (3q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPPA2   19197
Cards
Entrez_Gene (NCBI)DPPA2  151871  developmental pluripotency associated 2
AliasesCT100; ECAT15-2; PESCRG1
GeneCards (Weizmann)DPPA2
Ensembl hg19 (Hinxton)ENSG00000163530 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163530 [Gene_View]  chr3:109293788-109316517 [Contig_View]  DPPA2 [Vega]
ICGC DataPortalENSG00000163530
TCGA cBioPortalDPPA2
AceView (NCBI)DPPA2
Genatlas (Paris)DPPA2
WikiGenes151871
SOURCE (Princeton)DPPA2
Genetics Home Reference (NIH)DPPA2
Genomic and cartography
GoldenPath hg38 (UCSC)DPPA2  -     chr3:109293788-109316517 -  3q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPPA2  -     3q13.13   [Description]    (hg19-Feb_2009)
EnsemblDPPA2 - 3q13.13 [CytoView hg19]  DPPA2 - 3q13.13 [CytoView hg38]
Mapping of homologs : NCBIDPPA2 [Mapview hg19]  DPPA2 [Mapview hg38]
OMIM614445   
Gene and transcription
Genbank (Entrez)AA460929 AY283672 BC018070
RefSeq transcript (Entrez)NM_138815
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPPA2
Cluster EST : UnigeneHs.351113 [ NCBI ]
CGAP (NCI)Hs.351113
Alternative Splicing GalleryENSG00000163530
Gene ExpressionDPPA2 [ NCBI-GEO ]   DPPA2 [ EBI - ARRAY_EXPRESS ]   DPPA2 [ SEEK ]   DPPA2 [ MEM ]
Gene Expression Viewer (FireBrowse)DPPA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151871
GTEX Portal (Tissue expression)DPPA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7J5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7J5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7J5
Splice isoforms : SwissVarQ7Z7J5
PhosPhoSitePlusQ7Z7J5
Domaine pattern : Prosite (Expaxy)SAP (PS50800)   
Domains : Interpro (EBI)Dppa2/4_C_dom    Dppa2/4_central_dom    SAP_dom   
Domain families : Pfam (Sanger)DCR (PF14047)    Dppa2_A (PF14049)   
Domain families : Pfam (NCBI)pfam14047    pfam14049   
Conserved Domain (NCBI)DPPA2
DMDM Disease mutations151871
Blocks (Seattle)DPPA2
SuperfamilyQ7Z7J5
Human Protein AtlasENSG00000163530
Peptide AtlasQ7Z7J5
HPRD13248
IPIIPI00103113   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7J5
IntAct (EBI)Q7Z7J5
FunCoupENSG00000163530
BioGRIDDPPA2
STRING (EMBL)DPPA2
ZODIACDPPA2
Ontologies - Pathways
QuickGOQ7Z7J5
Ontology : AmiGOchromatin binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  stem cell population maintenance  regulation of histone methylation  lung-associated mesenchyme development  positive regulation of stem cell proliferation  
Ontology : EGO-EBIchromatin binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  stem cell population maintenance  regulation of histone methylation  lung-associated mesenchyme development  positive regulation of stem cell proliferation  
NDEx NetworkDPPA2
Atlas of Cancer Signalling NetworkDPPA2
Wikipedia pathwaysDPPA2
Orthology - Evolution
OrthoDB151871
GeneTree (enSembl)ENSG00000163530
Phylogenetic Trees/Animal Genes : TreeFamDPPA2
HOVERGENQ7Z7J5
HOGENOMQ7Z7J5
Homologs : HomoloGeneDPPA2
Homology/Alignments : Family Browser (UCSC)DPPA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPPA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPPA2
dbVarDPPA2
ClinVarDPPA2
1000_GenomesDPPA2 
Exome Variant ServerDPPA2
ExAC (Exome Aggregation Consortium)DPPA2 (select the gene name)
Genetic variants : HAPMAP151871
Genomic Variants (DGV)DPPA2 [DGVbeta]
DECIPHERDPPA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPPA2 
Mutations
ICGC Data PortalDPPA2 
TCGA Data PortalDPPA2 
Broad Tumor PortalDPPA2
OASIS PortalDPPA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPPA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPPA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPPA2
DgiDB (Drug Gene Interaction Database)DPPA2
DoCM (Curated mutations)DPPA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPPA2 (select a term)
intoGenDPPA2
Cancer3DDPPA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614445   
Orphanet
MedgenDPPA2
Genetic Testing Registry DPPA2
NextProtQ7Z7J5 [Medical]
TSGene151871
GENETestsDPPA2
Huge Navigator DPPA2 [HugePedia]
snp3D : Map Gene to Disease151871
BioCentury BCIQDPPA2
ClinGenDPPA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151871
Chemical/Pharm GKB GenePA134944028
Clinical trialDPPA2
Miscellaneous
canSAR (ICR)DPPA2 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPPA2
EVEXDPPA2
GoPubMedDPPA2
iHOPDPPA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:13:48 CEST 2017

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