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DPPA3 (developmental pluripotency associated 3)

Identity

Alias_symbol (synonym)Stella
Other aliasPgc7
STELLA
HGNC (Hugo) DPPA3
LocusID (NCBI) 359787
Atlas_Id 47240
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 7711454 and ends at 7717556 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPPA3   19199
Cards
Entrez_Gene (NCBI)DPPA3  359787  developmental pluripotency associated 3
AliasesPgc7; STELLA
GeneCards (Weizmann)DPPA3
Ensembl hg19 (Hinxton)ENSG00000187569 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187569 [Gene_View]  chr12:7711454-7717556 [Contig_View]  DPPA3 [Vega]
ICGC DataPortalENSG00000187569
TCGA cBioPortalDPPA3
AceView (NCBI)DPPA3
Genatlas (Paris)DPPA3
WikiGenes359787
SOURCE (Princeton)DPPA3
Genetics Home Reference (NIH)DPPA3
Genomic and cartography
GoldenPath hg38 (UCSC)DPPA3  -     chr12:7711454-7717556 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPPA3  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblDPPA3 - 12p13.31 [CytoView hg19]  DPPA3 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIDPPA3 [Mapview hg19]  DPPA3 [Mapview hg38]
OMIM608408   
Gene and transcription
Genbank (Entrez)AY317075 BC160067
RefSeq transcript (Entrez)NM_199286
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPPA3
Cluster EST : UnigeneHs.131358 [ NCBI ]
CGAP (NCI)Hs.131358
Alternative Splicing GalleryENSG00000187569
Gene ExpressionDPPA3 [ NCBI-GEO ]   DPPA3 [ EBI - ARRAY_EXPRESS ]   DPPA3 [ SEEK ]   DPPA3 [ MEM ]
Gene Expression Viewer (FireBrowse)DPPA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)359787
GTEX Portal (Tissue expression)DPPA3
Human Protein AtlasENSG00000187569-DPPA3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6W0C5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6W0C5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6W0C5
Splice isoforms : SwissVarQ6W0C5
PhosPhoSitePlusQ6W0C5
Domains : Interpro (EBI)Dppa3   
Domain families : Pfam (Sanger)PGC7_Stella (PF15549)   
Domain families : Pfam (NCBI)pfam15549   
Conserved Domain (NCBI)DPPA3
DMDM Disease mutations359787
Blocks (Seattle)DPPA3
SuperfamilyQ6W0C5
Human Protein Atlas [tissue]ENSG00000187569-DPPA3 [tissue]
Peptide AtlasQ6W0C5
HPRD16331
IPIIPI00241801   IPI00419228   
Protein Interaction databases
DIP (DOE-UCLA)Q6W0C5
IntAct (EBI)Q6W0C5
FunCoupENSG00000187569
BioGRIDDPPA3
STRING (EMBL)DPPA3
ZODIACDPPA3
Ontologies - Pathways
QuickGOQ6W0C5
Ontology : AmiGOfemale pronucleus  male pronucleus  nucleus  cytoplasm  covalent chromatin modification  methylated histone binding  methylated histone binding  embryonic cleavage  protection of DNA demethylation of female pronucleus  protection of DNA demethylation of female pronucleus  negative regulation of DNA demethylation  negative regulation of DNA demethylation  regulation of genetic imprinting  regulation of genetic imprinting  
Ontology : EGO-EBIfemale pronucleus  male pronucleus  nucleus  cytoplasm  covalent chromatin modification  methylated histone binding  methylated histone binding  embryonic cleavage  protection of DNA demethylation of female pronucleus  protection of DNA demethylation of female pronucleus  negative regulation of DNA demethylation  negative regulation of DNA demethylation  regulation of genetic imprinting  regulation of genetic imprinting  
NDEx NetworkDPPA3
Atlas of Cancer Signalling NetworkDPPA3
Wikipedia pathwaysDPPA3
Orthology - Evolution
OrthoDB359787
GeneTree (enSembl)ENSG00000187569
Phylogenetic Trees/Animal Genes : TreeFamDPPA3
HOVERGENQ6W0C5
HOGENOMQ6W0C5
Homologs : HomoloGeneDPPA3
Homology/Alignments : Family Browser (UCSC)DPPA3
Gene fusions - Rearrangements
Fusion: Tumor Portal DPPA3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPPA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPPA3
dbVarDPPA3
ClinVarDPPA3
1000_GenomesDPPA3 
Exome Variant ServerDPPA3
ExAC (Exome Aggregation Consortium)ENSG00000187569
GNOMAD BrowserENSG00000187569
Genetic variants : HAPMAP359787
Genomic Variants (DGV)DPPA3 [DGVbeta]
DECIPHERDPPA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPPA3 
Mutations
ICGC Data PortalDPPA3 
TCGA Data PortalDPPA3 
Broad Tumor PortalDPPA3
OASIS PortalDPPA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPPA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPPA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPPA3
DgiDB (Drug Gene Interaction Database)DPPA3
DoCM (Curated mutations)DPPA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPPA3 (select a term)
intoGenDPPA3
Cancer3DDPPA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608408   
Orphanet
MedgenDPPA3
Genetic Testing Registry DPPA3
NextProtQ6W0C5 [Medical]
TSGene359787
GENETestsDPPA3
Target ValidationDPPA3
Huge Navigator DPPA3 [HugePedia]
snp3D : Map Gene to Disease359787
BioCentury BCIQDPPA3
ClinGenDPPA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD359787
Chemical/Pharm GKB GenePA134951641
Clinical trialDPPA3
Miscellaneous
canSAR (ICR)DPPA3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPPA3
EVEXDPPA3
GoPubMedDPPA3
iHOPDPPA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:47:54 CET 2017

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