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DPPA4 (developmental pluripotency associated 4)

Identity

Alias_symbol (synonym)FLJ10713
Other alias2410091M23Rik
HGNC (Hugo) DPPA4
LocusID (NCBI) 55211
Atlas_Id 47247
Location 3q13.13  [Link to chromosome band 3q13]
Location_base_pair Starts at 109326141 and ends at 109337572 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ALDH1L2 (12q23.3) / DPPA4 (3q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPPA4   19200
Cards
Entrez_Gene (NCBI)DPPA4  55211  developmental pluripotency associated 4
Aliases2410091M23Rik
GeneCards (Weizmann)DPPA4
Ensembl hg19 (Hinxton)ENSG00000121570 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121570 [Gene_View]  chr3:109326141-109337572 [Contig_View]  DPPA4 [Vega]
ICGC DataPortalENSG00000121570
TCGA cBioPortalDPPA4
AceView (NCBI)DPPA4
Genatlas (Paris)DPPA4
WikiGenes55211
SOURCE (Princeton)DPPA4
Genetics Home Reference (NIH)DPPA4
Genomic and cartography
GoldenPath hg38 (UCSC)DPPA4  -     chr3:109326141-109337572 -  3q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPPA4  -     3q13.13   [Description]    (hg19-Feb_2009)
EnsemblDPPA4 - 3q13.13 [CytoView hg19]  DPPA4 - 3q13.13 [CytoView hg38]
Mapping of homologs : NCBIDPPA4 [Mapview hg19]  DPPA4 [Mapview hg38]
OMIM614125   
Gene and transcription
Genbank (Entrez)AA223751 AA224162 AK001575 AK022698 AK022821
RefSeq transcript (Entrez)NM_001348928 NM_001348929 NM_018189
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPPA4
Cluster EST : UnigeneHs.317659 [ NCBI ]
CGAP (NCI)Hs.317659
Alternative Splicing GalleryENSG00000121570
Gene ExpressionDPPA4 [ NCBI-GEO ]   DPPA4 [ EBI - ARRAY_EXPRESS ]   DPPA4 [ SEEK ]   DPPA4 [ MEM ]
Gene Expression Viewer (FireBrowse)DPPA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55211
GTEX Portal (Tissue expression)DPPA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L190   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L190  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L190
Splice isoforms : SwissVarQ7L190
PhosPhoSitePlusQ7L190
Domains : Interpro (EBI)Dppa2/4_C_dom    Dppa2/4_central_dom   
Domain families : Pfam (Sanger)DCR (PF14047)    Dppa2_A (PF14049)   
Domain families : Pfam (NCBI)pfam14047    pfam14049   
Conserved Domain (NCBI)DPPA4
DMDM Disease mutations55211
Blocks (Seattle)DPPA4
SuperfamilyQ7L190
Human Protein AtlasENSG00000121570
Peptide AtlasQ7L190
HPRD16836
IPIIPI00018878   IPI00922860   IPI00947419   
Protein Interaction databases
DIP (DOE-UCLA)Q7L190
IntAct (EBI)Q7L190
FunCoupENSG00000121570
BioGRIDDPPA4
STRING (EMBL)DPPA4
ZODIACDPPA4
Ontologies - Pathways
QuickGOQ7L190
Ontology : AmiGOprotein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  somatic stem cell population maintenance  lung-associated mesenchyme development  
Ontology : EGO-EBIprotein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  somatic stem cell population maintenance  lung-associated mesenchyme development  
NDEx NetworkDPPA4
Atlas of Cancer Signalling NetworkDPPA4
Wikipedia pathwaysDPPA4
Orthology - Evolution
OrthoDB55211
GeneTree (enSembl)ENSG00000121570
Phylogenetic Trees/Animal Genes : TreeFamDPPA4
HOVERGENQ7L190
HOGENOMQ7L190
Homologs : HomoloGeneDPPA4
Homology/Alignments : Family Browser (UCSC)DPPA4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPPA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPPA4
dbVarDPPA4
ClinVarDPPA4
1000_GenomesDPPA4 
Exome Variant ServerDPPA4
ExAC (Exome Aggregation Consortium)DPPA4 (select the gene name)
Genetic variants : HAPMAP55211
Genomic Variants (DGV)DPPA4 [DGVbeta]
DECIPHERDPPA4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPPA4 
Mutations
ICGC Data PortalDPPA4 
TCGA Data PortalDPPA4 
Broad Tumor PortalDPPA4
OASIS PortalDPPA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPPA4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPPA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPPA4
DgiDB (Drug Gene Interaction Database)DPPA4
DoCM (Curated mutations)DPPA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPPA4 (select a term)
intoGenDPPA4
Cancer3DDPPA4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614125   
Orphanet
MedgenDPPA4
Genetic Testing Registry DPPA4
NextProtQ7L190 [Medical]
TSGene55211
GENETestsDPPA4
Target ValidationDPPA4
Huge Navigator DPPA4 [HugePedia]
snp3D : Map Gene to Disease55211
BioCentury BCIQDPPA4
ClinGenDPPA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55211
Chemical/Pharm GKB GenePA134958838
Clinical trialDPPA4
Miscellaneous
canSAR (ICR)DPPA4 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPPA4
EVEXDPPA4
GoPubMedDPPA4
iHOPDPPA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:05:58 CEST 2017

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