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DPPA5 (developmental pluripotency associated 5)

Identity

Alias_symbol (synonym)Esg1
Other aliasESG1
HGNC (Hugo) DPPA5
LocusID (NCBI) 340168
Atlas_Id 62619
Location 6q13  [Link to chromosome band 6q13]
Location_base_pair Starts at 73353062 and ends at 73354276 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPPA5   19201
Cards
Entrez_Gene (NCBI)DPPA5  340168  developmental pluripotency associated 5
AliasesESG1
GeneCards (Weizmann)DPPA5
Ensembl hg19 (Hinxton)ENSG00000203909 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203909 [Gene_View]  ENSG00000203909 [Sequence]  chr6:73353062-73354276 [Contig_View]  DPPA5 [Vega]
ICGC DataPortalENSG00000203909
TCGA cBioPortalDPPA5
AceView (NCBI)DPPA5
Genatlas (Paris)DPPA5
WikiGenes340168
SOURCE (Princeton)DPPA5
Genetics Home Reference (NIH)DPPA5
Genomic and cartography
GoldenPath hg38 (UCSC)DPPA5  -     chr6:73353062-73354276 -  6q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPPA5  -     6q13   [Description]    (hg19-Feb_2009)
EnsemblDPPA5 - 6q13 [CytoView hg19]  DPPA5 - 6q13 [CytoView hg38]
Mapping of homologs : NCBIDPPA5 [Mapview hg19]  DPPA5 [Mapview hg38]
OMIM611111   
Gene and transcription
Genbank (Entrez)AA872428 AI365263 BC137549 BC137558 BX092581
RefSeq transcript (Entrez)NM_001025290
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPPA5
Cluster EST : UnigeneHs.125331 [ NCBI ]
CGAP (NCI)Hs.125331
Alternative Splicing GalleryENSG00000203909
Gene ExpressionDPPA5 [ NCBI-GEO ]   DPPA5 [ EBI - ARRAY_EXPRESS ]   DPPA5 [ SEEK ]   DPPA5 [ MEM ]
Gene Expression Viewer (FireBrowse)DPPA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340168
GTEX Portal (Tissue expression)DPPA5
Human Protein AtlasENSG00000203909-DPPA5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NC42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NC42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NC42
Splice isoforms : SwissVarA6NC42
PhosPhoSitePlusA6NC42
Domains : Interpro (EBI)KH_dom_type_1    MOEP19_KH-like   
Domain families : Pfam (Sanger)MOEP19 (PF16005)   
Domain families : Pfam (NCBI)pfam16005   
Conserved Domain (NCBI)DPPA5
DMDM Disease mutations340168
Blocks (Seattle)DPPA5
SuperfamilyA6NC42
Human Protein Atlas [tissue]ENSG00000203909-DPPA5 [tissue]
Peptide AtlasA6NC42
HPRD18786
IPIIPI00257112   
Protein Interaction databases
DIP (DOE-UCLA)A6NC42
IntAct (EBI)A6NC42
FunCoupENSG00000203909
BioGRIDDPPA5
STRING (EMBL)DPPA5
ZODIACDPPA5
Ontologies - Pathways
QuickGOA6NC42
Ontology : AmiGORNA binding  cytoplasm  multicellular organism development  
Ontology : EGO-EBIRNA binding  cytoplasm  multicellular organism development  
NDEx NetworkDPPA5
Atlas of Cancer Signalling NetworkDPPA5
Wikipedia pathwaysDPPA5
Orthology - Evolution
OrthoDB340168
GeneTree (enSembl)ENSG00000203909
Phylogenetic Trees/Animal Genes : TreeFamDPPA5
HOVERGENA6NC42
HOGENOMA6NC42
Homologs : HomoloGeneDPPA5
Homology/Alignments : Family Browser (UCSC)DPPA5
Gene fusions - Rearrangements
Fusion : QuiverDPPA5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPPA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPPA5
dbVarDPPA5
ClinVarDPPA5
1000_GenomesDPPA5 
Exome Variant ServerDPPA5
ExAC (Exome Aggregation Consortium)ENSG00000203909
GNOMAD BrowserENSG00000203909
Varsome BrowserDPPA5
Genetic variants : HAPMAP340168
Genomic Variants (DGV)DPPA5 [DGVbeta]
DECIPHERDPPA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPPA5 
Mutations
ICGC Data PortalDPPA5 
TCGA Data PortalDPPA5 
Broad Tumor PortalDPPA5
OASIS PortalDPPA5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPPA5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPPA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPPA5
DgiDB (Drug Gene Interaction Database)DPPA5
DoCM (Curated mutations)DPPA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPPA5 (select a term)
intoGenDPPA5
Cancer3DDPPA5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611111   
Orphanet
DisGeNETDPPA5
MedgenDPPA5
Genetic Testing Registry DPPA5
NextProtA6NC42 [Medical]
TSGene340168
GENETestsDPPA5
Target ValidationDPPA5
Huge Navigator DPPA5 [HugePedia]
snp3D : Map Gene to Disease340168
BioCentury BCIQDPPA5
ClinGenDPPA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340168
Chemical/Pharm GKB GenePA134964500
Clinical trialDPPA5
Miscellaneous
canSAR (ICR)DPPA5 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPPA5
EVEXDPPA5
GoPubMedDPPA5
iHOPDPPA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:43:13 CEST 2018

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