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DPT (dermatopontin)

Identity

Alias (NCBI)TRAMP
HGNC (Hugo) DPT
LocusID (NCBI) 1805
Atlas_Id 52811
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 168695468 and ends at 168729206 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)DPT   3011
Cards
Entrez_Gene (NCBI)DPT    dermatopontin
AliasesTRAMP
GeneCards (Weizmann)DPT
Ensembl hg19 (Hinxton)ENSG00000143196 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143196 [Gene_View]  ENSG00000143196 [Sequence]  chr1:168695468-168729206 [Contig_View]  DPT [Vega]
ICGC DataPortalENSG00000143196
TCGA cBioPortalDPT
AceView (NCBI)DPT
Genatlas (Paris)DPT
SOURCE (Princeton)DPT
Genetics Home Reference (NIH)DPT
Genomic and cartography
GoldenPath hg38 (UCSC)DPT  -     chr1:168695468-168729206 -  1q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPT  -     1q24.2   [Description]    (hg19-Feb_2009)
GoldenPathDPT - 1q24.2 [CytoView hg19]  DPT - 1q24.2 [CytoView hg38]
ImmunoBaseENSG00000143196
Genome Data Viewer NCBIDPT [Mapview hg19]  
OMIM125597   
Gene and transcription
Genbank (Entrez)AF086330 AI699890 AL049455 BC033736 BP257325
RefSeq transcript (Entrez)NM_001937
Consensus coding sequences : CCDS (NCBI)DPT
Gene ExpressionDPT [ NCBI-GEO ]   DPT [ EBI - ARRAY_EXPRESS ]   DPT [ SEEK ]   DPT [ MEM ]
Gene Expression Viewer (FireBrowse)DPT [ Firebrowse - Broad ]
GenevisibleExpression of DPT in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1805
GTEX Portal (Tissue expression)DPT
Human Protein AtlasENSG00000143196-DPT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ07507   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ07507  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ07507
PhosPhoSitePlusQ07507
Domains : Interpro (EBI)Dermatopontin_fam   
Domain families : Pfam (Sanger)DERM (PF14704)   
Domain families : Pfam (NCBI)pfam14704   
Conserved Domain (NCBI)DPT
SuperfamilyQ07507
AlphaFold pdb e-kbQ07507   
Human Protein Atlas [tissue]ENSG00000143196-DPT [tissue]
HPRD00510
Protein Interaction databases
DIP (DOE-UCLA)Q07507
IntAct (EBI)Q07507
BioGRIDDPT
STRING (EMBL)DPT
ZODIACDPT
Ontologies - Pathways
QuickGOQ07507
Ontology : AmiGOextracellular matrix structural constituent  extracellular matrix structural constituent  protein binding  extracellular space  cell adhesion  negative regulation of cell population proliferation  collagen fibril organization  collagen-containing extracellular matrix  collagen-containing extracellular matrix  collagen-containing extracellular matrix  
Ontology : EGO-EBIextracellular matrix structural constituent  extracellular matrix structural constituent  protein binding  extracellular space  cell adhesion  negative regulation of cell population proliferation  collagen fibril organization  collagen-containing extracellular matrix  collagen-containing extracellular matrix  collagen-containing extracellular matrix  
NDEx NetworkDPT
Atlas of Cancer Signalling NetworkDPT
Wikipedia pathwaysDPT
Orthology - Evolution
OrthoDB1805
GeneTree (enSembl)ENSG00000143196
Phylogenetic Trees/Animal Genes : TreeFamDPT
Homologs : HomoloGeneDPT
Homology/Alignments : Family Browser (UCSC)DPT
Gene fusions - Rearrangements
Fusion : QuiverDPT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPT
dbVarDPT
ClinVarDPT
MonarchDPT
1000_GenomesDPT 
Exome Variant ServerDPT
GNOMAD BrowserENSG00000143196
Varsome BrowserDPT
ACMGDPT variants
VarityQ07507
Genomic Variants (DGV)DPT [DGVbeta]
DECIPHERDPT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPT 
Mutations
ICGC Data PortalDPT 
TCGA Data PortalDPT 
Broad Tumor PortalDPT
OASIS PortalDPT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPT  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDPT
Mutations and Diseases : HGMDDPT
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaDPT
DgiDB (Drug Gene Interaction Database)DPT
DoCM (Curated mutations)DPT
CIViC (Clinical Interpretations of Variants in Cancer)DPT
Cancer3DDPT
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM125597   
Orphanet
DisGeNETDPT
MedgenDPT
Genetic Testing Registry DPT
NextProtQ07507 [Medical]
GENETestsDPT
Target ValidationDPT
Huge Navigator DPT [HugePedia]
ClinGenDPT
Clinical trials, drugs, therapy
MyCancerGenomeDPT
Protein Interactions : CTDDPT
Pharm GKB GenePA27471
PharosQ07507
Clinical trialDPT
Miscellaneous
canSAR (ICR)DPT
HarmonizomeDPT
DataMed IndexDPT
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXDPT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:07:16 CEST 2021

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