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DPT (dermatopontin)

Identity

Other aliasTRAMP
HGNC (Hugo) DPT
LocusID (NCBI) 1805
Atlas_Id 52811
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 168695457 and ends at 168729204 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPT   3011
Cards
Entrez_Gene (NCBI)DPT  1805  dermatopontin
AliasesTRAMP
GeneCards (Weizmann)DPT
Ensembl hg19 (Hinxton)ENSG00000143196 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143196 [Gene_View]  chr1:168695457-168729204 [Contig_View]  DPT [Vega]
ICGC DataPortalENSG00000143196
TCGA cBioPortalDPT
AceView (NCBI)DPT
Genatlas (Paris)DPT
WikiGenes1805
SOURCE (Princeton)DPT
Genetics Home Reference (NIH)DPT
Genomic and cartography
GoldenPath hg38 (UCSC)DPT  -     chr1:168695457-168729204 -  1q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPT  -     1q24.2   [Description]    (hg19-Feb_2009)
EnsemblDPT - 1q24.2 [CytoView hg19]  DPT - 1q24.2 [CytoView hg38]
Mapping of homologs : NCBIDPT [Mapview hg19]  DPT [Mapview hg38]
OMIM125597   
Gene and transcription
Genbank (Entrez)AF086330 AI699890 AL049455 BC033736 BP257325
RefSeq transcript (Entrez)NM_001937
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPT
Cluster EST : UnigeneHs.80552 [ NCBI ]
CGAP (NCI)Hs.80552
Alternative Splicing GalleryENSG00000143196
Gene ExpressionDPT [ NCBI-GEO ]   DPT [ EBI - ARRAY_EXPRESS ]   DPT [ SEEK ]   DPT [ MEM ]
Gene Expression Viewer (FireBrowse)DPT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1805
GTEX Portal (Tissue expression)DPT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ07507   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ07507  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ07507
Splice isoforms : SwissVarQ07507
PhosPhoSitePlusQ07507
Domains : Interpro (EBI)Dermatopontin_fam   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DPT
DMDM Disease mutations1805
Blocks (Seattle)DPT
SuperfamilyQ07507
Human Protein AtlasENSG00000143196
Peptide AtlasQ07507
HPRD00510
IPIIPI00292130   
Protein Interaction databases
DIP (DOE-UCLA)Q07507
IntAct (EBI)Q07507
FunCoupENSG00000143196
BioGRIDDPT
STRING (EMBL)DPT
ZODIACDPT
Ontologies - Pathways
QuickGOQ07507
Ontology : AmiGOproteinaceous extracellular matrix  extracellular space  cell adhesion  negative regulation of cell proliferation  collagen fibril organization  extracellular matrix  extracellular matrix  extracellular exosome  
Ontology : EGO-EBIproteinaceous extracellular matrix  extracellular space  cell adhesion  negative regulation of cell proliferation  collagen fibril organization  extracellular matrix  extracellular matrix  extracellular exosome  
NDEx NetworkDPT
Atlas of Cancer Signalling NetworkDPT
Wikipedia pathwaysDPT
Orthology - Evolution
OrthoDB1805
GeneTree (enSembl)ENSG00000143196
Phylogenetic Trees/Animal Genes : TreeFamDPT
HOVERGENQ07507
HOGENOMQ07507
Homologs : HomoloGeneDPT
Homology/Alignments : Family Browser (UCSC)DPT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPT
dbVarDPT
ClinVarDPT
1000_GenomesDPT 
Exome Variant ServerDPT
ExAC (Exome Aggregation Consortium)DPT (select the gene name)
Genetic variants : HAPMAP1805
Genomic Variants (DGV)DPT [DGVbeta]
DECIPHERDPT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPT 
Mutations
ICGC Data PortalDPT 
TCGA Data PortalDPT 
Broad Tumor PortalDPT
OASIS PortalDPT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPT
DgiDB (Drug Gene Interaction Database)DPT
DoCM (Curated mutations)DPT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPT (select a term)
intoGenDPT
Cancer3DDPT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM125597   
Orphanet
MedgenDPT
Genetic Testing Registry DPT
NextProtQ07507 [Medical]
TSGene1805
GENETestsDPT
Target ValidationDPT
Huge Navigator DPT [HugePedia]
snp3D : Map Gene to Disease1805
BioCentury BCIQDPT
ClinGenDPT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1805
Chemical/Pharm GKB GenePA27471
Clinical trialDPT
Miscellaneous
canSAR (ICR)DPT (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPT
EVEXDPT
GoPubMedDPT
iHOPDPT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:59:53 CEST 2017

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