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DPY19L1 (dpy-19 like 1)

Identity

Alias_namesdpy-19 like 1 (C. elegans)
Alias_symbol (synonym)KIAA0877
Other alias-
HGNC (Hugo) DPY19L1
LocusID (NCBI) 23333
Atlas_Id 62622
Location 7p14.2  [Link to chromosome band 7p14]
Location_base_pair Starts at 34928881 and ends at 35038041 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BACE2 (21q22.2) / DPY19L1 (7p14.3)DPY19L1 (7p14.3) / CDKAL1 (6p22.3)DPY19L1 (7p14.3) / HOXA11 (7p15.2)
DPY19L1 (7p14.3) / NRXN2 (11q13.1)DPY19L1 (7p14.3) / SDK1 (7p22.2)DPY19L1 NRXN2
DPY19L1 SDK1DPY19L1 CDKAL1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPY19L1   22205
Cards
Entrez_Gene (NCBI)DPY19L1  23333  dpy-19 like 1
Aliases
GeneCards (Weizmann)DPY19L1
Ensembl hg19 (Hinxton)ENSG00000173852 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173852 [Gene_View]  chr7:34928881-35038041 [Contig_View]  DPY19L1 [Vega]
ICGC DataPortalENSG00000173852
TCGA cBioPortalDPY19L1
AceView (NCBI)DPY19L1
Genatlas (Paris)DPY19L1
WikiGenes23333
SOURCE (Princeton)DPY19L1
Genetics Home Reference (NIH)DPY19L1
Genomic and cartography
GoldenPath hg38 (UCSC)DPY19L1  -     chr7:34928881-35038041 -  7p14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPY19L1  -     7p14.2   [Description]    (hg19-Feb_2009)
EnsemblDPY19L1 - 7p14.2 [CytoView hg19]  DPY19L1 - 7p14.2 [CytoView hg38]
Mapping of homologs : NCBIDPY19L1 [Mapview hg19]  DPY19L1 [Mapview hg38]
OMIM613892   
Gene and transcription
Genbank (Entrez)AB020684 AJ011911 BC029591 BC050318 BC064476
RefSeq transcript (Entrez)NM_015283
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPY19L1
Cluster EST : UnigeneHs.408623 [ NCBI ]
CGAP (NCI)Hs.408623
Alternative Splicing GalleryENSG00000173852
Gene ExpressionDPY19L1 [ NCBI-GEO ]   DPY19L1 [ EBI - ARRAY_EXPRESS ]   DPY19L1 [ SEEK ]   DPY19L1 [ MEM ]
Gene Expression Viewer (FireBrowse)DPY19L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23333
GTEX Portal (Tissue expression)DPY19L1
Human Protein AtlasENSG00000173852-DPY19L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2PZI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2PZI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2PZI1
Splice isoforms : SwissVarQ2PZI1
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ2PZI1
Domains : Interpro (EBI)Dpy-19/Dpy-19-like    DPY19L1   
Domain families : Pfam (Sanger)Dpy19 (PF10034)   
Domain families : Pfam (NCBI)pfam10034   
Conserved Domain (NCBI)DPY19L1
DMDM Disease mutations23333
Blocks (Seattle)DPY19L1
SuperfamilyQ2PZI1
Human Protein Atlas [tissue]ENSG00000173852-DPY19L1 [tissue]
Peptide AtlasQ2PZI1
IPIIPI00007461   IPI00784443   IPI00927377   IPI00848219   
Protein Interaction databases
DIP (DOE-UCLA)Q2PZI1
IntAct (EBI)Q2PZI1
FunCoupENSG00000173852
BioGRIDDPY19L1
STRING (EMBL)DPY19L1
ZODIACDPY19L1
Ontologies - Pathways
QuickGOQ2PZI1
Ontology : AmiGOmannosyltransferase activity  nuclear inner membrane  membrane  integral component of membrane  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  
Ontology : EGO-EBImannosyltransferase activity  nuclear inner membrane  membrane  integral component of membrane  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  
NDEx NetworkDPY19L1
Atlas of Cancer Signalling NetworkDPY19L1
Wikipedia pathwaysDPY19L1
Orthology - Evolution
OrthoDB23333
GeneTree (enSembl)ENSG00000173852
Phylogenetic Trees/Animal Genes : TreeFamDPY19L1
HOVERGENQ2PZI1
HOGENOMQ2PZI1
Homologs : HomoloGeneDPY19L1
Homology/Alignments : Family Browser (UCSC)DPY19L1
Gene fusions - Rearrangements
Fusion: TCGA_MDACCDPY19L1 NRXN2
Fusion: TCGA_MDACCDPY19L1 SDK1
Fusion: TCGA_MDACCDPY19L1 CDKAL1
Tumor Fusion PortalDPY19L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPY19L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPY19L1
dbVarDPY19L1
ClinVarDPY19L1
1000_GenomesDPY19L1 
Exome Variant ServerDPY19L1
ExAC (Exome Aggregation Consortium)ENSG00000173852
GNOMAD BrowserENSG00000173852
Genetic variants : HAPMAP23333
Genomic Variants (DGV)DPY19L1 [DGVbeta]
DECIPHERDPY19L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPY19L1 
Mutations
ICGC Data PortalDPY19L1 
TCGA Data PortalDPY19L1 
Broad Tumor PortalDPY19L1
OASIS PortalDPY19L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPY19L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPY19L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPY19L1
DgiDB (Drug Gene Interaction Database)DPY19L1
DoCM (Curated mutations)DPY19L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPY19L1 (select a term)
intoGenDPY19L1
Cancer3DDPY19L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613892   
Orphanet
DisGeNETDPY19L1
MedgenDPY19L1
Genetic Testing Registry DPY19L1
NextProtQ2PZI1 [Medical]
TSGene23333
GENETestsDPY19L1
Target ValidationDPY19L1
Huge Navigator DPY19L1 [HugePedia]
snp3D : Map Gene to Disease23333
BioCentury BCIQDPY19L1
ClinGenDPY19L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23333
Chemical/Pharm GKB GenePA142671946
Clinical trialDPY19L1
Miscellaneous
canSAR (ICR)DPY19L1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPY19L1
EVEXDPY19L1
GoPubMedDPY19L1
iHOPDPY19L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:15:58 CET 2017

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