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DPY19L2 (dpy-19 like 2)

Identity

Alias_namesdpy-19 like 2 (C. elegans)
Alias_symbol (synonym)FLJ32949
SPATA34
Other aliasSPGF9
HGNC (Hugo) DPY19L2
LocusID (NCBI) 283417
Atlas_Id 54265
Location 12q14.2  [Link to chromosome band 12q14]
Location_base_pair Starts at 63952693 and ends at 64062354 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PPFIA2 (12q21.31) / DPY19L2 (12q14.2)PPFIA2 12q21.31 / DPY19L2 12q14.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPY19L2   19414
Cards
Entrez_Gene (NCBI)DPY19L2  283417  dpy-19 like 2
AliasesSPATA34; SPGF9
GeneCards (Weizmann)DPY19L2
Ensembl hg19 (Hinxton)ENSG00000177990 [Gene_View]  chr12:63952693-64062354 [Contig_View]  DPY19L2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177990 [Gene_View]  chr12:63952693-64062354 [Contig_View]  DPY19L2 [Vega]
ICGC DataPortalENSG00000177990
TCGA cBioPortalDPY19L2
AceView (NCBI)DPY19L2
Genatlas (Paris)DPY19L2
WikiGenes283417
SOURCE (Princeton)DPY19L2
Genetics Home Reference (NIH)DPY19L2
Genomic and cartography
GoldenPath hg19 (UCSC)DPY19L2  -     chr12:63952693-64062354 -  12q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DPY19L2  -     12q14.2   [Description]    (hg38-Dec_2013)
EnsemblDPY19L2 - 12q14.2 [CytoView hg19]  DPY19L2 - 12q14.2 [CytoView hg38]
Mapping of homologs : NCBIDPY19L2 [Mapview hg19]  DPY19L2 [Mapview hg38]
OMIM613893   613958   
Gene and transcription
Genbank (Entrez)AK057511 AK303727 AK310102 AL833344 AY358792
RefSeq transcript (Entrez)NM_173812
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_031909 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)DPY19L2
Cluster EST : UnigeneHs.533644 [ NCBI ]
CGAP (NCI)Hs.533644
Alternative Splicing GalleryENSG00000177990
Gene ExpressionDPY19L2 [ NCBI-GEO ]   DPY19L2 [ EBI - ARRAY_EXPRESS ]   DPY19L2 [ SEEK ]   DPY19L2 [ MEM ]
Gene Expression Viewer (FireBrowse)DPY19L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283417
GTEX Portal (Tissue expression)DPY19L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUT2
Splice isoforms : SwissVarQ6NUT2
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ6NUT2
Domains : Interpro (EBI)Dpy-19/Dpy-19-like   
Domain families : Pfam (Sanger)Dpy19 (PF10034)   
Domain families : Pfam (NCBI)pfam10034   
Conserved Domain (NCBI)DPY19L2
DMDM Disease mutations283417
Blocks (Seattle)DPY19L2
SuperfamilyQ6NUT2
Human Protein AtlasENSG00000177990
Peptide AtlasQ6NUT2
HPRD08151
IPIIPI00065441   IPI01015632   IPI01010010   IPI01014721   IPI01016021   IPI01013826   IPI01015142   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUT2
IntAct (EBI)Q6NUT2
FunCoupENSG00000177990
BioGRIDDPY19L2
STRING (EMBL)DPY19L2
ZODIACDPY19L2
Ontologies - Pathways
QuickGOQ6NUT2
Ontology : AmiGOmannosyltransferase activity  nucleus  nuclear inner membrane  multicellular organism development  spermatid development  integral component of membrane  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  
Ontology : EGO-EBImannosyltransferase activity  nucleus  nuclear inner membrane  multicellular organism development  spermatid development  integral component of membrane  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  
NDEx NetworkDPY19L2
Atlas of Cancer Signalling NetworkDPY19L2
Wikipedia pathwaysDPY19L2
Orthology - Evolution
OrthoDB283417
GeneTree (enSembl)ENSG00000177990
Phylogenetic Trees/Animal Genes : TreeFamDPY19L2
HOVERGENQ6NUT2
HOGENOMQ6NUT2
Homologs : HomoloGeneDPY19L2
Homology/Alignments : Family Browser (UCSC)DPY19L2
Gene fusions - Rearrangements
Fusion : MitelmanPPFIA2/DPY19L2 [12q21.31/12q14.2]  [t(12;12)(q14;q21)]  
Fusion: TCGAPPFIA2 12q21.31 DPY19L2 12q14.2 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPY19L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPY19L2
dbVarDPY19L2
ClinVarDPY19L2
1000_GenomesDPY19L2 
Exome Variant ServerDPY19L2
ExAC (Exome Aggregation Consortium)DPY19L2 (select the gene name)
Genetic variants : HAPMAP283417
Genomic Variants (DGV)DPY19L2 [DGVbeta]
DECIPHER (Syndromes)12:63952693-64062354  ENSG00000177990
CONAN: Copy Number AnalysisDPY19L2 
Mutations
ICGC Data PortalDPY19L2 
TCGA Data PortalDPY19L2 
Broad Tumor PortalDPY19L2
OASIS PortalDPY19L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPY19L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPY19L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPY19L2
DgiDB (Drug Gene Interaction Database)DPY19L2
DoCM (Curated mutations)DPY19L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPY19L2 (select a term)
intoGenDPY19L2
Cancer3DDPY19L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613893    613958   
Orphanet17932   
MedgenDPY19L2
Genetic Testing Registry DPY19L2
NextProtQ6NUT2 [Medical]
TSGene283417
GENETestsDPY19L2
Huge Navigator DPY19L2 [HugePedia]
snp3D : Map Gene to Disease283417
BioCentury BCIQDPY19L2
ClinGenDPY19L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283417
Chemical/Pharm GKB GenePA142671949
Clinical trialDPY19L2
Miscellaneous
canSAR (ICR)DPY19L2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPY19L2
EVEXDPY19L2
GoPubMedDPY19L2
iHOPDPY19L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:59:20 CEST 2017

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