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DPY19L2P1 (DPY19L2 pseudogene 1)

Identity

Alias_namesdpy-19-like 2 pseudogene 1 (C. elegans)
Other alias-
HGNC (Hugo) DPY19L2P1
LocusID (NCBI) 554236
Atlas_Id 62624
Location 7p14.2  [Link to chromosome band 7p14]
Location_base_pair Starts at 35081287 and ends at 35186162 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCAS3 (17q23.2) / DPY19L2P1 (7p14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(7;17)(p14;q23) BCAS3/DPY19L2P1

External links

Nomenclature
HGNC (Hugo)DPY19L2P1   22305
Cards
Entrez_Gene (NCBI)DPY19L2P1  554236  DPY19L2 pseudogene 1
Aliases
GeneCards (Weizmann)DPY19L2P1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:35081287-35186162 [Contig_View]  DPY19L2P1 [Vega]
TCGA cBioPortalDPY19L2P1
AceView (NCBI)DPY19L2P1
Genatlas (Paris)DPY19L2P1
WikiGenes554236
SOURCE (Princeton)DPY19L2P1
Genetics Home Reference (NIH)DPY19L2P1
Genomic and cartography
GoldenPath hg38 (UCSC)DPY19L2P1  -     chr7:35081287-35186162 -  7p14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPY19L2P1  -     7p14.2   [Description]    (hg19-Feb_2009)
EnsemblDPY19L2P1 - 7p14.2 [CytoView hg19]  DPY19L2P1 - 7p14.2 [CytoView hg38]
Mapping of homologs : NCBIDPY19L2P1 [Mapview hg19]  DPY19L2P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK304236 BC013598 BC066987 BX647611 BX648666
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPY19L2P1
Cluster EST : UnigeneHs.594815 [ NCBI ]
CGAP (NCI)Hs.594815
Gene ExpressionDPY19L2P1 [ NCBI-GEO ]   DPY19L2P1 [ EBI - ARRAY_EXPRESS ]   DPY19L2P1 [ SEEK ]   DPY19L2P1 [ MEM ]
Gene Expression Viewer (FireBrowse)DPY19L2P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)554236
GTEX Portal (Tissue expression)DPY19L2P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NXN4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NXN4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NXN4
Splice isoforms : SwissVarQ6NXN4
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ6NXN4
Domains : Interpro (EBI)Dpy-19/Dpy-19-like    DPY19L2   
Domain families : Pfam (Sanger)Dpy19 (PF10034)   
Domain families : Pfam (NCBI)pfam10034   
Conserved Domain (NCBI)DPY19L2P1
DMDM Disease mutations554236
Blocks (Seattle)DPY19L2P1
SuperfamilyQ6NXN4
Peptide AtlasQ6NXN4
IPIIPI00433420   
Protein Interaction databases
DIP (DOE-UCLA)Q6NXN4
IntAct (EBI)Q6NXN4
BioGRIDDPY19L2P1
STRING (EMBL)DPY19L2P1
ZODIACDPY19L2P1
Ontologies - Pathways
QuickGOQ6NXN4
Ontology : AmiGOmannosyltransferase activity  nuclear inner membrane  spermatid development  integral component of membrane  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  
Ontology : EGO-EBImannosyltransferase activity  nuclear inner membrane  spermatid development  integral component of membrane  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  
NDEx NetworkDPY19L2P1
Atlas of Cancer Signalling NetworkDPY19L2P1
Wikipedia pathwaysDPY19L2P1
Orthology - Evolution
OrthoDB554236
Phylogenetic Trees/Animal Genes : TreeFamDPY19L2P1
HOVERGENQ6NXN4
HOGENOMQ6NXN4
Homologs : HomoloGeneDPY19L2P1
Homology/Alignments : Family Browser (UCSC)DPY19L2P1
Gene fusions - Rearrangements
Fusion : QuiverDPY19L2P1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPY19L2P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPY19L2P1
dbVarDPY19L2P1
ClinVarDPY19L2P1
1000_GenomesDPY19L2P1 
Exome Variant ServerDPY19L2P1
Genetic variants : HAPMAP554236
Genomic Variants (DGV)DPY19L2P1 [DGVbeta]
DECIPHERDPY19L2P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPY19L2P1 
Mutations
ICGC Data PortalDPY19L2P1 
TCGA Data PortalDPY19L2P1 
Broad Tumor PortalDPY19L2P1
OASIS PortalDPY19L2P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDPY19L2P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPY19L2P1
DgiDB (Drug Gene Interaction Database)DPY19L2P1
DoCM (Curated mutations)DPY19L2P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPY19L2P1 (select a term)
intoGenDPY19L2P1
Cancer3DDPY19L2P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDPY19L2P1
MedgenDPY19L2P1
Genetic Testing Registry DPY19L2P1
NextProtQ6NXN4 [Medical]
TSGene554236
GENETestsDPY19L2P1
Target ValidationDPY19L2P1
Huge Navigator DPY19L2P1 [HugePedia]
snp3D : Map Gene to Disease554236
BioCentury BCIQDPY19L2P1
ClinGenDPY19L2P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD554236
Chemical/Pharm GKB GenePA142671950
Clinical trialDPY19L2P1
Miscellaneous
canSAR (ICR)DPY19L2P1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPY19L2P1
EVEXDPY19L2P1
GoPubMedDPY19L2P1
iHOPDPY19L2P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:16:50 CET 2018
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