Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DPY19L2P2 (DPY19L2 pseudogene 2)

Identity

Alias_namesdpy-19-like 2 pseudogene 2 (C. elegans)
Alias_symbol (synonym)DKFZp434E092
FLJ36166
Other alias-
HGNC (Hugo) DPY19L2P2
LocusID (NCBI) 349152
Atlas_Id 78405
Location 7_KI270806v1_alt  [Link to chromosome band 7]
Location_base_pair Starts at 1443 and ends at 66964 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GATAD2B (1q21.3) / DPY19L2P2 (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPY19L2P2   21764
Cards
Entrez_Gene (NCBI)DPY19L2P2  349152  DPY19L2 pseudogene 2
Aliases
GeneCards (Weizmann)DPY19L2P2
Ensembl hg19 (Hinxton)ENSG00000170629 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170629 [Gene_View]  chr7_KI270806v1_alt:1443-66964 [Contig_View]  DPY19L2P2 [Vega]
ICGC DataPortalENSG00000170629
TCGA cBioPortalDPY19L2P2
AceView (NCBI)DPY19L2P2
Genatlas (Paris)DPY19L2P2
WikiGenes349152
SOURCE (Princeton)DPY19L2P2
Genetics Home Reference (NIH)DPY19L2P2
Genomic and cartography
GoldenPath hg38 (UCSC)DPY19L2P2  -     chr7_KI270806v1_alt:1443-66964 +  7_KI270806v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPY19L2P2  -     7_KI270806v1_alt   [Description]    (hg19-Feb_2009)
EnsemblDPY19L2P2 - 7_KI270806v1_alt [CytoView hg19]  DPY19L2P2 - 7_KI270806v1_alt [CytoView hg38]
Mapping of homologs : NCBIDPY19L2P2 [Mapview hg19]  DPY19L2P2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093485 AK097711 AK131353 AK302046 AL049437
RefSeq transcript (Entrez)NM_182634
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_187559
Consensus coding sequences : CCDS (NCBI)DPY19L2P2
Cluster EST : UnigeneHs.732579 [ NCBI ]
CGAP (NCI)Hs.732579
Alternative Splicing GalleryENSG00000170629
Gene ExpressionDPY19L2P2 [ NCBI-GEO ]   DPY19L2P2 [ EBI - ARRAY_EXPRESS ]   DPY19L2P2 [ SEEK ]   DPY19L2P2 [ MEM ]
Gene Expression Viewer (FireBrowse)DPY19L2P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)349152
GTEX Portal (Tissue expression)DPY19L2P2
Human Protein AtlasENSG00000170629-DPY19L2P2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZN68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZN68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZN68
Splice isoforms : SwissVarQ6ZN68
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ6ZN68
Domains : Interpro (EBI)Dpy-19/Dpy-19-like   
Domain families : Pfam (Sanger)Dpy19 (PF10034)   
Domain families : Pfam (NCBI)pfam10034   
Conserved Domain (NCBI)DPY19L2P2
DMDM Disease mutations349152
Blocks (Seattle)DPY19L2P2
SuperfamilyQ6ZN68
Human Protein Atlas [tissue]ENSG00000170629-DPY19L2P2 [tissue]
Peptide AtlasQ6ZN68
HPRD08772
IPIIPI00298724   IPI00745541   IPI00890737   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZN68
IntAct (EBI)Q6ZN68
FunCoupENSG00000170629
BioGRIDDPY19L2P2
STRING (EMBL)DPY19L2P2
ZODIACDPY19L2P2
Ontologies - Pathways
QuickGOQ6ZN68
Ontology : AmiGOmannosyltransferase activity  nuclear inner membrane  spermatid development  integral component of membrane  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  
Ontology : EGO-EBImannosyltransferase activity  nuclear inner membrane  spermatid development  integral component of membrane  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  
NDEx NetworkDPY19L2P2
Atlas of Cancer Signalling NetworkDPY19L2P2
Wikipedia pathwaysDPY19L2P2
Orthology - Evolution
OrthoDB349152
GeneTree (enSembl)ENSG00000170629
Phylogenetic Trees/Animal Genes : TreeFamDPY19L2P2
HOVERGENQ6ZN68
HOGENOMQ6ZN68
Homologs : HomoloGeneDPY19L2P2
Homology/Alignments : Family Browser (UCSC)DPY19L2P2
Gene fusions - Rearrangements
Tumor Fusion PortalDPY19L2P2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPY19L2P2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPY19L2P2
dbVarDPY19L2P2
ClinVarDPY19L2P2
1000_GenomesDPY19L2P2 
Exome Variant ServerDPY19L2P2
ExAC (Exome Aggregation Consortium)ENSG00000170629
GNOMAD BrowserENSG00000170629
Genetic variants : HAPMAP349152
Genomic Variants (DGV)DPY19L2P2 [DGVbeta]
DECIPHERDPY19L2P2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPY19L2P2 
Mutations
ICGC Data PortalDPY19L2P2 
TCGA Data PortalDPY19L2P2 
Broad Tumor PortalDPY19L2P2
OASIS PortalDPY19L2P2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDPY19L2P2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPY19L2P2
DgiDB (Drug Gene Interaction Database)DPY19L2P2
DoCM (Curated mutations)DPY19L2P2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPY19L2P2 (select a term)
intoGenDPY19L2P2
Cancer3DDPY19L2P2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDPY19L2P2
MedgenDPY19L2P2
Genetic Testing Registry DPY19L2P2
NextProtQ6ZN68 [Medical]
TSGene349152
GENETestsDPY19L2P2
Target ValidationDPY19L2P2
Huge Navigator DPY19L2P2 [HugePedia]
snp3D : Map Gene to Disease349152
BioCentury BCIQDPY19L2P2
ClinGenDPY19L2P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD349152
Chemical/Pharm GKB GenePA142671951
Clinical trialDPY19L2P2
Miscellaneous
canSAR (ICR)DPY19L2P2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPY19L2P2
EVEXDPY19L2P2
GoPubMedDPY19L2P2
iHOPDPY19L2P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:15:59 CET 2017

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