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DPY19L3 (dpy-19 like 3 (C. elegans))

Identity

Other alias-
HGNC (Hugo) DPY19L3
LocusID (NCBI) 147991
Atlas_Id 62628
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 32405749 and ends at 32485893 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DPY19L3 (19q13.11) / GPR68 (14q32.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPY19L3   27120
Cards
Entrez_Gene (NCBI)DPY19L3  147991  dpy-19 like 3 (C. elegans)
Aliases
GeneCards (Weizmann)DPY19L3
Ensembl hg19 (Hinxton)ENSG00000178904 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178904 [Gene_View]  chr19:32405749-32485893 [Contig_View]  DPY19L3 [Vega]
ICGC DataPortalENSG00000178904
TCGA cBioPortalDPY19L3
AceView (NCBI)DPY19L3
Genatlas (Paris)DPY19L3
WikiGenes147991
SOURCE (Princeton)DPY19L3
Genetics Home Reference (NIH)DPY19L3
Genomic and cartography
GoldenPath hg38 (UCSC)DPY19L3  -     chr19:32405749-32485893 +  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPY19L3  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblDPY19L3 - 19q13.11 [CytoView hg19]  DPY19L3 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBIDPY19L3 [Mapview hg19]  DPY19L3 [Mapview hg38]
OMIM613894   
Gene and transcription
Genbank (Entrez)AF533710 AF533711 AK024775 AK125846 AK126264
RefSeq transcript (Entrez)NM_001172774 NM_207325
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DPY19L3
Cluster EST : UnigeneHs.194392 [ NCBI ]
CGAP (NCI)Hs.194392
Alternative Splicing GalleryENSG00000178904
Gene ExpressionDPY19L3 [ NCBI-GEO ]   DPY19L3 [ EBI - ARRAY_EXPRESS ]   DPY19L3 [ SEEK ]   DPY19L3 [ MEM ]
Gene Expression Viewer (FireBrowse)DPY19L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147991
GTEX Portal (Tissue expression)DPY19L3
Human Protein AtlasENSG00000178904-DPY19L3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZPD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZPD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZPD9
Splice isoforms : SwissVarQ6ZPD9
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ6ZPD9
Domains : Interpro (EBI)Dpy-19/Dpy-19-like    DPY19L3   
Domain families : Pfam (Sanger)Dpy19 (PF10034)   
Domain families : Pfam (NCBI)pfam10034   
Conserved Domain (NCBI)DPY19L3
DMDM Disease mutations147991
Blocks (Seattle)DPY19L3
SuperfamilyQ6ZPD9
Human Protein Atlas [tissue]ENSG00000178904-DPY19L3 [tissue]
Peptide AtlasQ6ZPD9
HPRD14078
IPIIPI00410211   IPI00472828   IPI00385110   IPI00385111   IPI00167054   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZPD9
IntAct (EBI)Q6ZPD9
FunCoupENSG00000178904
BioGRIDDPY19L3
STRING (EMBL)DPY19L3
ZODIACDPY19L3
Ontologies - Pathways
QuickGOQ6ZPD9
Ontology : AmiGOmannosyltransferase activity  nuclear inner membrane  integral component of membrane  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  
Ontology : EGO-EBImannosyltransferase activity  nuclear inner membrane  integral component of membrane  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  
NDEx NetworkDPY19L3
Atlas of Cancer Signalling NetworkDPY19L3
Wikipedia pathwaysDPY19L3
Orthology - Evolution
OrthoDB147991
GeneTree (enSembl)ENSG00000178904
Phylogenetic Trees/Animal Genes : TreeFamDPY19L3
HOVERGENQ6ZPD9
HOGENOMQ6ZPD9
Homologs : HomoloGeneDPY19L3
Homology/Alignments : Family Browser (UCSC)DPY19L3
Gene fusions - Rearrangements
Tumor Fusion PortalDPY19L3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPY19L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPY19L3
dbVarDPY19L3
ClinVarDPY19L3
1000_GenomesDPY19L3 
Exome Variant ServerDPY19L3
ExAC (Exome Aggregation Consortium)ENSG00000178904
GNOMAD BrowserENSG00000178904
Genetic variants : HAPMAP147991
Genomic Variants (DGV)DPY19L3 [DGVbeta]
DECIPHERDPY19L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPY19L3 
Mutations
ICGC Data PortalDPY19L3 
TCGA Data PortalDPY19L3 
Broad Tumor PortalDPY19L3
OASIS PortalDPY19L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPY19L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPY19L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPY19L3
DgiDB (Drug Gene Interaction Database)DPY19L3
DoCM (Curated mutations)DPY19L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPY19L3 (select a term)
intoGenDPY19L3
Cancer3DDPY19L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613894   
Orphanet
DisGeNETDPY19L3
MedgenDPY19L3
Genetic Testing Registry DPY19L3
NextProtQ6ZPD9 [Medical]
TSGene147991
GENETestsDPY19L3
Target ValidationDPY19L3
Huge Navigator DPY19L3 [HugePedia]
snp3D : Map Gene to Disease147991
BioCentury BCIQDPY19L3
ClinGenDPY19L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147991
Chemical/Pharm GKB GenePA142671954
Clinical trialDPY19L3
Miscellaneous
canSAR (ICR)DPY19L3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPY19L3
EVEXDPY19L3
GoPubMedDPY19L3
iHOPDPY19L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:38:29 CET 2017

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