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DPY19L4 (dpy-19-like 4 (C. elegans))

Identity

Other alias-
HGNC (Hugo) DPY19L4
LocusID (NCBI) 286148
Atlas_Id 62629
Location 8q22.1  [Link to chromosome band 8q22]
Location_base_pair Starts at 95732103 and ends at 95806076 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IMPACT (18q11.2) / DPY19L4 (8q22.1)INTS8 (8q22.1) / DPY19L4 (8q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DPY19L4   27829
Cards
Entrez_Gene (NCBI)DPY19L4  286148  dpy-19-like 4 (C. elegans)
Aliases
GeneCards (Weizmann)DPY19L4
Ensembl hg19 (Hinxton)ENSG00000156162 [Gene_View]  chr8:95732103-95806076 [Contig_View]  DPY19L4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156162 [Gene_View]  chr8:95732103-95806076 [Contig_View]  DPY19L4 [Vega]
ICGC DataPortalENSG00000156162
TCGA cBioPortalDPY19L4
AceView (NCBI)DPY19L4
Genatlas (Paris)DPY19L4
WikiGenes286148
SOURCE (Princeton)DPY19L4
Genetics Home Reference (NIH)DPY19L4
Genomic and cartography
GoldenPath hg19 (UCSC)DPY19L4  -     chr8:95732103-95806076 +  8q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DPY19L4  -     8q22.1   [Description]    (hg38-Dec_2013)
EnsemblDPY19L4 - 8q22.1 [CytoView hg19]  DPY19L4 - 8q22.1 [CytoView hg38]
Mapping of homologs : NCBIDPY19L4 [Mapview hg19]  DPY19L4 [Mapview hg38]
OMIM613895   
Gene and transcription
Genbank (Entrez)AF086017 AK123618 AK123682 AL049962 AL832859
RefSeq transcript (Entrez)NM_181787
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)DPY19L4
Cluster EST : UnigeneHs.567828 [ NCBI ]
CGAP (NCI)Hs.567828
Alternative Splicing GalleryENSG00000156162
Gene ExpressionDPY19L4 [ NCBI-GEO ]   DPY19L4 [ EBI - ARRAY_EXPRESS ]   DPY19L4 [ SEEK ]   DPY19L4 [ MEM ]
Gene Expression Viewer (FireBrowse)DPY19L4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286148
GTEX Portal (Tissue expression)DPY19L4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z388   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z388  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z388
Splice isoforms : SwissVarQ7Z388
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ7Z388
Domains : Interpro (EBI)Dpy-19/Dpy-19-like    DPY19L4   
Domain families : Pfam (Sanger)Dpy19 (PF10034)   
Domain families : Pfam (NCBI)pfam10034   
Conserved Domain (NCBI)DPY19L4
DMDM Disease mutations286148
Blocks (Seattle)DPY19L4
SuperfamilyQ7Z388
Human Protein AtlasENSG00000156162
Peptide AtlasQ7Z388
HPRD11259
IPIIPI00334281   IPI00974281   IPI00979501   IPI00982393   IPI00978834   IPI00981079   IPI00978751   IPI00980398   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z388
IntAct (EBI)Q7Z388
FunCoupENSG00000156162
BioGRIDDPY19L4
STRING (EMBL)DPY19L4
ZODIACDPY19L4
Ontologies - Pathways
QuickGOQ7Z388
Ontology : AmiGOmannosyltransferase activity  nuclear inner membrane  integral component of membrane  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  
Ontology : EGO-EBImannosyltransferase activity  nuclear inner membrane  integral component of membrane  protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan  
NDEx NetworkDPY19L4
Atlas of Cancer Signalling NetworkDPY19L4
Wikipedia pathwaysDPY19L4
Orthology - Evolution
OrthoDB286148
GeneTree (enSembl)ENSG00000156162
Phylogenetic Trees/Animal Genes : TreeFamDPY19L4
HOVERGENQ7Z388
HOGENOMQ7Z388
Homologs : HomoloGeneDPY19L4
Homology/Alignments : Family Browser (UCSC)DPY19L4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPY19L4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPY19L4
dbVarDPY19L4
ClinVarDPY19L4
1000_GenomesDPY19L4 
Exome Variant ServerDPY19L4
ExAC (Exome Aggregation Consortium)DPY19L4 (select the gene name)
Genetic variants : HAPMAP286148
Genomic Variants (DGV)DPY19L4 [DGVbeta]
DECIPHER (Syndromes)8:95732103-95806076  ENSG00000156162
CONAN: Copy Number AnalysisDPY19L4 
Mutations
ICGC Data PortalDPY19L4 
TCGA Data PortalDPY19L4 
Broad Tumor PortalDPY19L4
OASIS PortalDPY19L4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPY19L4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDPY19L4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DPY19L4
DgiDB (Drug Gene Interaction Database)DPY19L4
DoCM (Curated mutations)DPY19L4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DPY19L4 (select a term)
intoGenDPY19L4
Cancer3DDPY19L4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613895   
Orphanet
MedgenDPY19L4
Genetic Testing Registry DPY19L4
NextProtQ7Z388 [Medical]
TSGene286148
GENETestsDPY19L4
Huge Navigator DPY19L4 [HugePedia]
snp3D : Map Gene to Disease286148
BioCentury BCIQDPY19L4
ClinGenDPY19L4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286148
Chemical/Pharm GKB GenePA142671955
Clinical trialDPY19L4
Miscellaneous
canSAR (ICR)DPY19L4 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDPY19L4
EVEXDPY19L4
GoPubMedDPY19L4
iHOPDPY19L4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:02:12 CET 2017

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