Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DPYSL4 (dihydropyrimidinase like 4)

Identity

Alias (NCBI)CRMP3
DRP-4
ULIP4
HGNC (Hugo) DPYSL4
HGNC Alias symbULIP4
DRP-4
CRMP3
HGNC Previous namedihydropyrimidinase-like 4
LocusID (NCBI) 10570
Atlas_Id 57606
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 132186948 and ends at 132205759 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BICC1 (10q21.1) / DPYSL4 (10q26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)DPYSL4   3016
Cards
Entrez_Gene (NCBI)DPYSL4    dihydropyrimidinase like 4
AliasesCRMP3; DRP-4; ULIP4
GeneCards (Weizmann)DPYSL4
Ensembl hg19 (Hinxton)ENSG00000151640 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151640 [Gene_View]  ENSG00000151640 [Sequence]  chr10:132186948-132205759 [Contig_View]  DPYSL4 [Vega]
ICGC DataPortalENSG00000151640
TCGA cBioPortalDPYSL4
AceView (NCBI)DPYSL4
Genatlas (Paris)DPYSL4
SOURCE (Princeton)DPYSL4
Genetics Home Reference (NIH)DPYSL4
Genomic and cartography
GoldenPath hg38 (UCSC)DPYSL4  -     chr10:132186948-132205759 +  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DPYSL4  -     10q26.3   [Description]    (hg19-Feb_2009)
GoldenPathDPYSL4 - 10q26.3 [CytoView hg19]  DPYSL4 - 10q26.3 [CytoView hg38]
ImmunoBaseENSG00000151640
Genome Data Viewer NCBIDPYSL4 [Mapview hg19]  
OMIM608407   
Gene and transcription
Genbank (Entrez)AB006713 BC029280 BC136329 BC136330 BC142974
RefSeq transcript (Entrez)NM_006426
Consensus coding sequences : CCDS (NCBI)DPYSL4
Gene ExpressionDPYSL4 [ NCBI-GEO ]   DPYSL4 [ EBI - ARRAY_EXPRESS ]   DPYSL4 [ SEEK ]   DPYSL4 [ MEM ]
Gene Expression Viewer (FireBrowse)DPYSL4 [ Firebrowse - Broad ]
GenevisibleExpression of DPYSL4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10570
GTEX Portal (Tissue expression)DPYSL4
Human Protein AtlasENSG00000151640-DPYSL4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14531   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14531  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14531
PhosPhoSitePlusO14531
Domains : Interpro (EBI)Amidohydro-rel    DRP4    Hydantoinase/dihydroPyrase    Metal-dep_hydrolase_composite    Metal_Hydrolase   
Domain families : Pfam (Sanger)Amidohydro_1 (PF01979)   
Domain families : Pfam (NCBI)pfam01979   
Conserved Domain (NCBI)DPYSL4
PDB (RSDB)5NKS   
PDB Europe5NKS   
PDB (PDBSum)5NKS   
PDB (IMB)5NKS   
Structural Biology KnowledgeBase5NKS   
SCOP (Structural Classification of Proteins)5NKS   
CATH (Classification of proteins structures)5NKS   
SuperfamilyO14531
AlphaFold pdb e-kbO14531   
Human Protein Atlas [tissue]ENSG00000151640-DPYSL4 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O14531
IntAct (EBI)O14531
BioGRIDDPYSL4
STRING (EMBL)DPYSL4
ZODIACDPYSL4
Ontologies - Pathways
QuickGOO14531
Ontology : AmiGOdihydropyrimidinase activity  protein binding  cytosol  pyrimidine nucleobase catabolic process  nervous system development  filamin binding  neuron death  neuron projection guidance  
Ontology : EGO-EBIdihydropyrimidinase activity  protein binding  cytosol  pyrimidine nucleobase catabolic process  nervous system development  filamin binding  neuron death  neuron projection guidance  
NDEx NetworkDPYSL4
Atlas of Cancer Signalling NetworkDPYSL4
Wikipedia pathwaysDPYSL4
Orthology - Evolution
OrthoDB10570
GeneTree (enSembl)ENSG00000151640
Phylogenetic Trees/Animal Genes : TreeFamDPYSL4
Homologs : HomoloGeneDPYSL4
Homology/Alignments : Family Browser (UCSC)DPYSL4
Gene fusions - Rearrangements
Fusion : QuiverDPYSL4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDPYSL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DPYSL4
dbVarDPYSL4
ClinVarDPYSL4
MonarchDPYSL4
1000_GenomesDPYSL4 
Exome Variant ServerDPYSL4
GNOMAD BrowserENSG00000151640
Varsome BrowserDPYSL4
ACMGDPYSL4 variants
VarityO14531
Genomic Variants (DGV)DPYSL4 [DGVbeta]
DECIPHERDPYSL4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDPYSL4 
Mutations
ICGC Data PortalDPYSL4 
TCGA Data PortalDPYSL4 
Broad Tumor PortalDPYSL4
OASIS PortalDPYSL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDPYSL4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDPYSL4
Mutations and Diseases : HGMDDPYSL4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaDPYSL4
DgiDB (Drug Gene Interaction Database)DPYSL4
DoCM (Curated mutations)DPYSL4
CIViC (Clinical Interpretations of Variants in Cancer)DPYSL4
Cancer3DDPYSL4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608407   
Orphanet
DisGeNETDPYSL4
MedgenDPYSL4
Genetic Testing Registry DPYSL4
NextProtO14531 [Medical]
GENETestsDPYSL4
Target ValidationDPYSL4
Huge Navigator DPYSL4 [HugePedia]
ClinGenDPYSL4
Clinical trials, drugs, therapy
MyCancerGenomeDPYSL4
Protein Interactions : CTDDPYSL4
Pharm GKB GenePA27474
PharosO14531
Clinical trialDPYSL4
Miscellaneous
canSAR (ICR)DPYSL4
HarmonizomeDPYSL4
DataMed IndexDPYSL4
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXDPYSL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:07:17 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.