Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DRGX (dorsal root ganglia homeobox)

Identity

Alias_namesPRRXL1
paired related homeobox-like 1
Alias_symbol (synonym)DRG11
Other alias
HGNC (Hugo) DRGX
LocusID (NCBI) 644168
Atlas_Id 62644
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 49366116 and ends at 49396016 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KTN1 (14q22.3) / DRGX (10q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DRGX   21536
Cards
Entrez_Gene (NCBI)DRGX  644168  dorsal root ganglia homeobox
AliasesDRG11; PRRXL1
GeneCards (Weizmann)DRGX
Ensembl hg19 (Hinxton)ENSG00000165606 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165606 [Gene_View]  chr10:49366116-49396016 [Contig_View]  DRGX [Vega]
ICGC DataPortalENSG00000165606
TCGA cBioPortalDRGX
AceView (NCBI)DRGX
Genatlas (Paris)DRGX
WikiGenes644168
SOURCE (Princeton)DRGX
Genetics Home Reference (NIH)DRGX
Genomic and cartography
GoldenPath hg38 (UCSC)DRGX  -     chr10:49366116-49396016 -  10q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DRGX  -     10q11.23   [Description]    (hg19-Feb_2009)
EnsemblDRGX - 10q11.23 [CytoView hg19]  DRGX - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBIDRGX [Mapview hg19]  DRGX [Mapview hg38]
OMIM606701   
Gene and transcription
Genbank (Entrez)DW009785 HY131276
RefSeq transcript (Entrez)NM_001080520 NM_001276451
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DRGX
Cluster EST : UnigeneHs.534530 [ NCBI ]
CGAP (NCI)Hs.534530
Alternative Splicing GalleryENSG00000165606
Gene ExpressionDRGX [ NCBI-GEO ]   DRGX [ EBI - ARRAY_EXPRESS ]   DRGX [ SEEK ]   DRGX [ MEM ]
Gene Expression Viewer (FireBrowse)DRGX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644168
GTEX Portal (Tissue expression)DRGX
Human Protein AtlasENSG00000165606-DRGX [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNA5
Splice isoforms : SwissVarA6NNA5
PhosPhoSitePlusA6NNA5
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)    OAR (PS50803)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    OAR_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)    OAR (PF03826)   
Domain families : Pfam (NCBI)pfam00046    pfam03826   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)DRGX
DMDM Disease mutations644168
Blocks (Seattle)DRGX
SuperfamilyA6NNA5
Human Protein Atlas [tissue]ENSG00000165606-DRGX [tissue]
Peptide AtlasA6NNA5
IPIIPI00060044   IPI00943047   
Protein Interaction databases
DIP (DOE-UCLA)A6NNA5
IntAct (EBI)A6NNA5
FunCoupENSG00000165606
BioGRIDDRGX
STRING (EMBL)DRGX
ZODIACDRGX
Ontologies - Pathways
QuickGOA6NNA5
Ontology : AmiGOneuron migration  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  axon guidance  detection of chemical stimulus  detection of temperature stimulus  dorsal spinal cord development  trigeminal nerve development  sequence-specific DNA binding  sensory perception of mechanical stimulus  
Ontology : EGO-EBIneuron migration  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  axon guidance  detection of chemical stimulus  detection of temperature stimulus  dorsal spinal cord development  trigeminal nerve development  sequence-specific DNA binding  sensory perception of mechanical stimulus  
NDEx NetworkDRGX
Atlas of Cancer Signalling NetworkDRGX
Wikipedia pathwaysDRGX
Orthology - Evolution
OrthoDB644168
GeneTree (enSembl)ENSG00000165606
Phylogenetic Trees/Animal Genes : TreeFamDRGX
HOVERGENA6NNA5
HOGENOMA6NNA5
Homologs : HomoloGeneDRGX
Homology/Alignments : Family Browser (UCSC)DRGX
Gene fusions - Rearrangements
Tumor Fusion PortalDRGX
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDRGX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DRGX
dbVarDRGX
ClinVarDRGX
1000_GenomesDRGX 
Exome Variant ServerDRGX
ExAC (Exome Aggregation Consortium)ENSG00000165606
GNOMAD BrowserENSG00000165606
Genetic variants : HAPMAP644168
Genomic Variants (DGV)DRGX [DGVbeta]
DECIPHERDRGX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDRGX 
Mutations
ICGC Data PortalDRGX 
TCGA Data PortalDRGX 
Broad Tumor PortalDRGX
OASIS PortalDRGX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDRGX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDRGX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DRGX
DgiDB (Drug Gene Interaction Database)DRGX
DoCM (Curated mutations)DRGX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DRGX (select a term)
intoGenDRGX
Cancer3DDRGX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606701   
Orphanet
DisGeNETDRGX
MedgenDRGX
Genetic Testing Registry DRGX
NextProtA6NNA5 [Medical]
TSGene644168
GENETestsDRGX
Target ValidationDRGX
Huge Navigator DRGX [HugePedia]
snp3D : Map Gene to Disease644168
BioCentury BCIQDRGX
ClinGenDRGX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644168
Chemical/Pharm GKB GenePA162384078
Clinical trialDRGX
Miscellaneous
canSAR (ICR)DRGX (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDRGX
EVEXDRGX
GoPubMedDRGX
iHOPDRGX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:21:27 CET 2017

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