Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DSCR10 (Down syndrome critical region 10 (non-protein coding))

Identity

Alias_namesDown syndrome critical region gene 10
Other alias-
HGNC (Hugo) DSCR10
LocusID (NCBI) 259234
Atlas_Id 62651
Location 21q22.13  [Link to chromosome band 21q22]
Location_base_pair Starts at 38206156 and ends at 38208644 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DSCR10   16302
Cards
Entrez_Gene (NCBI)DSCR10  259234  Down syndrome critical region 10 (non-protein coding)
Aliases
GeneCards (Weizmann)DSCR10
Ensembl hg19 (Hinxton)ENSG00000233316 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233316 [Gene_View]  chr21:38206156-38208644 [Contig_View]  DSCR10 [Vega]
ICGC DataPortalENSG00000233316
TCGA cBioPortalDSCR10
AceView (NCBI)DSCR10
Genatlas (Paris)DSCR10
WikiGenes259234
SOURCE (Princeton)DSCR10
Genetics Home Reference (NIH)DSCR10
Genomic and cartography
GoldenPath hg38 (UCSC)DSCR10  -     chr21:38206156-38208644 +  21q22.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DSCR10  -     21q22.13   [Description]    (hg19-Feb_2009)
EnsemblDSCR10 - 21q22.13 [CytoView hg19]  DSCR10 - 21q22.13 [CytoView hg38]
Mapping of homologs : NCBIDSCR10 [Mapview hg19]  DSCR10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB066291 AW663423 BC093855 BX115939
RefSeq transcript (Entrez)NM_148676
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DSCR10
Cluster EST : UnigeneHs.147695 [ NCBI ]
CGAP (NCI)Hs.147695
Alternative Splicing GalleryENSG00000233316
Gene ExpressionDSCR10 [ NCBI-GEO ]   DSCR10 [ EBI - ARRAY_EXPRESS ]   DSCR10 [ SEEK ]   DSCR10 [ MEM ]
Gene Expression Viewer (FireBrowse)DSCR10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)259234
GTEX Portal (Tissue expression)DSCR10
Human Protein AtlasENSG00000233316-DSCR10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59022   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59022  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59022
Splice isoforms : SwissVarP59022
PhosPhoSitePlusP59022
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DSCR10
DMDM Disease mutations259234
Blocks (Seattle)DSCR10
SuperfamilyP59022
Human Protein Atlas [tissue]ENSG00000233316-DSCR10 [tissue]
Peptide AtlasP59022
HPRD10922
IPIIPI00164927   
Protein Interaction databases
DIP (DOE-UCLA)P59022
IntAct (EBI)P59022
FunCoupENSG00000233316
BioGRIDDSCR10
STRING (EMBL)DSCR10
ZODIACDSCR10
Ontologies - Pathways
QuickGOP59022
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkDSCR10
Atlas of Cancer Signalling NetworkDSCR10
Wikipedia pathwaysDSCR10
Orthology - Evolution
OrthoDB259234
GeneTree (enSembl)ENSG00000233316
Phylogenetic Trees/Animal Genes : TreeFamDSCR10
HOVERGENP59022
HOGENOMP59022
Homologs : HomoloGeneDSCR10
Homology/Alignments : Family Browser (UCSC)DSCR10
Gene fusions - Rearrangements
Fusion: Tumor Portal DSCR10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDSCR10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DSCR10
dbVarDSCR10
ClinVarDSCR10
1000_GenomesDSCR10 
Exome Variant ServerDSCR10
ExAC (Exome Aggregation Consortium)ENSG00000233316
GNOMAD BrowserENSG00000233316
Genetic variants : HAPMAP259234
Genomic Variants (DGV)DSCR10 [DGVbeta]
DECIPHERDSCR10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDSCR10 
Mutations
ICGC Data PortalDSCR10 
TCGA Data PortalDSCR10 
Broad Tumor PortalDSCR10
OASIS PortalDSCR10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDSCR10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DSCR10
DgiDB (Drug Gene Interaction Database)DSCR10
DoCM (Curated mutations)DSCR10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DSCR10 (select a term)
intoGenDSCR10
Cancer3DDSCR10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDSCR10
Genetic Testing Registry DSCR10
NextProtP59022 [Medical]
TSGene259234
GENETestsDSCR10
Target ValidationDSCR10
Huge Navigator DSCR10 [HugePedia]
snp3D : Map Gene to Disease259234
BioCentury BCIQDSCR10
ClinGenDSCR10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD259234
Chemical/Pharm GKB GenePA38400
Clinical trialDSCR10
Miscellaneous
canSAR (ICR)DSCR10 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDSCR10
EVEXDSCR10
GoPubMedDSCR10
iHOPDSCR10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search`in aLl =/b>EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:45:12 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.