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DSCR8 (Down syndrome critical region 8 (non-protein coding))

Identity

Alias_namesC21orf65
chromosome 21 open reading frame 65
Alias_symbol (synonym)MTAG2
CT25.1a
CT25.1b
MMA-1a
MMA-1b
Other aliasMMA-1
MMA1
HGNC (Hugo) DSCR8
LocusID (NCBI) 84677
Atlas_Id 45916
Location 21q22.13  [Link to chromosome band 21q22]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DSCR8   16707
Cards
Entrez_Gene (NCBI)DSCR8  84677  Down syndrome critical region 8 (non-protein coding)
AliasesC21orf65; CT25.1a; CT25.1b; MMA-1; 
MMA-1a; MMA-1b; MMA1; MTAG2
GeneCards (Weizmann)DSCR8
Ensembl hg19 (Hinxton)ENSG00000198054 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198054 [Gene_View]  - [Contig_View]  DSCR8 [Vega]
ICGC DataPortalENSG00000198054
TCGA cBioPortalDSCR8
AceView (NCBI)DSCR8
Genatlas (Paris)DSCR8
WikiGenes84677
SOURCE (Princeton)DSCR8
Genetics Home Reference (NIH)DSCR8
Genomic and cartography
GoldenPath hg38 (UCSC)DSCR8  -  
GoldenPath hg19 (UCSC)DSCR8  -  
EnsemblDSCR8 - [CytoView hg19]  DSCR8 - [CytoView hg38]
Mapping of homologs : NCBIDSCR8 [Mapview hg19]  DSCR8 [Mapview hg38]
OMIM613396   
Gene and transcription
Genbank (Entrez)AA707621 AA770014 AF321193 AF426256 AJ001904
RefSeq transcript (Entrez)NM_032589 NM_203428 NM_203429
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DSCR8
Cluster EST : UnigeneHs.733345 [ NCBI ]
CGAP (NCI)Hs.733345
Alternative Splicing GalleryENSG00000198054
Gene ExpressionDSCR8 [ NCBI-GEO ]   DSCR8 [ EBI - ARRAY_EXPRESS ]   DSCR8 [ SEEK ]   DSCR8 [ MEM ]
Gene Expression Viewer (FireBrowse)DSCR8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84677
GTEX Portal (Tissue expression)DSCR8
Human Protein AtlasENSG00000198054-DSCR8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96T75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96T75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96T75
Splice isoforms : SwissVarQ96T75
PhosPhoSitePlusQ96T75
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DSCR8
DMDM Disease mutations84677
Blocks (Seattle)DSCR8
SuperfamilyQ96T75
Human Protein Atlas [tissue]ENSG00000198054-DSCR8 [tissue]
Peptide AtlasQ96T75
HPRD10924
IPIIPI00045923   IPI00216166   IPI00216167   IPI00216168   IPI00929598   
Protein Interaction databases
DIP (DOE-UCLA)Q96T75
IntAct (EBI)Q96T75
FunCoupENSG00000198054
BioGRIDDSCR8
STRING (EMBL)DSCR8
ZODIACDSCR8
Ontologies - Pathways
QuickGOQ96T75
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkDSCR8
Atlas of Cancer Signalling NetworkDSCR8
Wikipedia pathwaysDSCR8
Orthology - Evolution
OrthoDB84677
GeneTree (enSembl)ENSG00000198054
Phylogenetic Trees/Animal Genes : TreeFamDSCR8
HOVERGENQ96T75
HOGENOMQ96T75
Homologs : HomoloGeneDSCR8
Homology/Alignments : Family Browser (UCSC)DSCR8
Gene fusions - Rearrangements
Tumor Fusion PortalDSCR8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDSCR8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DSCR8
dbVarDSCR8
ClinVarDSCR8
1000_GenomesDSCR8 
Exome Variant ServerDSCR8
ExAC (Exome Aggregation Consortium)ENSG00000198054
GNOMAD BrowserENSG00000198054
Genetic variants : HAPMAP84677
Genomic Variants (DGV)DSCR8 [DGVbeta]
DECIPHERDSCR8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDSCR8 
Mutations
ICGC Data PortalDSCR8 
TCGA Data PortalDSCR8 
Broad Tumor PortalDSCR8
OASIS PortalDSCR8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDSCR8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDSCR8
BioMutasearch DSCR8
DgiDB (Drug Gene Interaction Database)DSCR8
DoCM (Curated mutations)DSCR8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DSCR8 (select a term)
intoGenDSCR8
Cancer3DDSCR8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613396   
Orphanet
DisGeNETDSCR8
MedgenDSCR8
Genetic Testing Registry DSCR8
NextProtQ96T75 [Medical]
TSGene84677
GENETestsDSCR8
Target ValidationDSCR8
Huge Navigator DSCR8 [HugePedia]
snp3D : Map Gene to Disease84677
BioCentury BCIQDSCR8
ClinGenDSCR8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84677
Chemical/Pharm GKB GenePA27500
Clinical trialDSCR8
Miscellaneous
canSAR (ICR)DSCR8 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDSCR8
EVEXDSCR8
GoPubMedDSCR8
iHOPDSCR8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:11:12 CET 2017

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